Lactuca sativa (garden lettuce): 111891932
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Entry
111891932 CDS
T05352
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111891932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111891932
04121 Ubiquitin system [BR:
lsv04121
]
111891932
03036 Chromosome and associated proteins [BR:
lsv03036
]
111891932
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111891932
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
111891932
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
111891932
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
111891932
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
111891932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-HC5HC2H_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-RING_6
RTT107_BRCT_5
PHD_NSD
zf-C3HC4_4
Prok-RING_4
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
111891932
NCBI-ProteinID:
XP_023743771
LinkDB
All DBs
Position
2:complement(184884896..184888460)
Genome browser
AA seq
636 aa
AA seq
DB search
MEEAQRLLNPWVLHLQKLGLELKCPLCLQLFNRPVLLPCNHIFCNLCMPKAVETGSECPS
CKHQYIDREVKPASFMENIVNIYRDIDRTFNANLFRPVQSDVTRVSAQSPASVKIDVNSD
SRNENVEIVQSGNSSNGQSTTSQTVKPTLLNTPAEELATRVFKKCVTPESGQKQKFNITV
DDKPSLSDSTGQVATEKQMETERHSPKRPVENDSYGTNLESNTRSTSGAKSQTIEVKRQK
KTSDGLNDTSVVLDSKRSPCAFCNSSEETDGSGPLVSYARGKEVVGNVANFSKVTHVHEN
CIQWAPRIYFKDGIIHNLESEVARASKLKCYSCGKKGAVLGCYMKSCKKTYHVPCAYYNF
ECRWDQIAFLMLCPNHTHIKFPHEKKMKKNTEKGISTHMNPCMTQVKAKQNLVFCGSALS
PEEKSSLIEFARSNDSIVLRYWRPNVTHVIAAIDSNGACTRTLKVLMAILNGKWIVTVEW
VKACVEAGCLVNEEPYEVHLDTHGCSGGPKAGRLRVKNNGPKLFNNLKFYFVGDFVKAFK
SDLLNLVATAGGTVVEAKDQLLAGSNGGDEDVKWECVVVYNADLSDHSEFDNEDSVKFQR
IAVAQDIAQESCSQIVGHTWILESIAGCCLLPFTKV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagctcagaggctgctcaatccatgggtgcttcatctccaaaaactcggcctc
gagctcaaatgccccctttgccttcagttgtttaatcgaccggtgttattaccttgcaat
cacattttctgcaatctgtgtatgccgaaagcagtggaaactgggtctgagtgtccatct
tgtaaacatcagtatatcgatcgagaggtgaagcctgcgtctttcatggagaacattgta
aacatctatagggatattgatcgtaccttcaatgcaaatctttttcgtcctgtgcaatct
gatgttactcgggtatcagcacagtcccctgcttctgttaagatcgatgttaacagtgat
tcaagaaatgagaatgttgagatagtacaatctgggaattctagcaatgggcaatctaca
acttcacaaactgttaaacccactttattaaacactcctgctgaagaattggccactagg
gtttttaaaaaatgtgttaccccagaaagtggacagaaacaaaagttcaacatcactgtt
gatgataaaccaagtctttctgattcaacgggacaggtggcgactgagaagcaaatggag
actgaaagacattcaccaaaaagaccagttgaaaatgattcttatgggacaaatcttgag
tcaaacactagatccacctcaggagctaaaagtcaaactattgaagtcaaaagacaaaag
aaaacaagtgatgggctaaatgacacatctgttgttttggattcgaaaagaagtccttgt
gccttttgtaattcttctgaagaaacagatgggagtggaccattggtgtcttatgcccga
gggaaggaagtagtgggtaatgtggctaacttctctaaggttacacatgttcatgaaaat
tgtattcaatgggctcctaggatttactttaaggatggaatcattcataatttagaatca
gaagtggcaagggctagcaaactgaaatgctacagctgtggtaaaaaaggagctgttctt
ggatgctatatgaagtcatgtaaaaaaacttatcatgtgccatgtgcatattacaatttt
gaatgcagatgggatcagattgcctttttgatgctttgtccaaatcatacacatatcaaa
tttccacatgagaagaaaatgaagaaaaacacagaaaaaggaatatcaacacatatgaat
ccttgcatgacacaagtgaaagctaaacagaatttggtattttgtggttcagctctatct
ccagaagaaaagtcatctttgattgaatttgcaagaagtaatgattcaatagtgttgaga
tactggagacctaatgtgactcatgtcattgctgccatagattcaaatggcgcatgtaca
agaacattgaaagtccttatggccattttgaatgggaaatggattgttacagtagaatgg
gtaaaagcatgtgtggaagctggatgtcttgtgaatgaagaaccatatgaagtccatcta
gacacccatggatgttctggtgggcccaaagctggaaggctaagagtaaaaaataatggt
ccaaagcttttcaacaacttgaagttctactttgttggggattttgtaaaagctttcaag
agtgatcttttaaacttggtggcaactgctggtggcacagtggttgaggcaaaggatcag
ttattggcaggtagtaatggtggagatgaagatgtgaagtgggaatgtgtggttgtttac
aatgctgacctttcagatcactctgagtttgataatgaggattctgttaagtttcaaaga
atagctgtagctcaagacattgctcaagaatcttgttctcaaattgttgggcatacttgg
attttggagtcaattgctggatgctgtttattgccttttacaaaggtctaa
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