Lactuca sativa (garden lettuce): 111892130
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Entry
111892130 CDS
T05352
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111892130
Transcription machinery [BR:
lsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111892130
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
111892130
NCBI-ProteinID:
XP_023743973
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Position
2:224926411..224929808
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AA seq
498 aa
AA seq
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MMATTAVIGLTAGKRILCSSSYYSDVNEKLSCSSNLGFTYVPTTNLISSKKSPNYTHSIT
RSRDTSPVRALKEHVDTTVAPPITDKWVQGFDHLDEEVSEHDLPVDALLLLHKSLLEKQW
TLSTDAPTKDKSSRKVHVTGSGVSARRRRINAQNKKPTVNEDGGIGNKQLRSIISPELVQ
NCQKGYLKGMKNETLLTHSEVVALSEKIKIGLHLEEEKSRLKERLGSEPSEKQLAASLKI
SRVELQAKQIECSLAREKLALSNVGLVMSVALKYKHMGADMSDLIQGGLIGLLRGIEKYD
SSRGHKISTYVYWWIRQGVTRTFFENSRTLRLPTHLHERLGAIRNAKAKLERKGITPSID
KIAETLNMSRKKVTNATEAVCKVFSLDKEAFPSLNGLPGETLHSYIADDCPENDPWHGVD
EGALKDEVRNLIKMTLGEREREIIHLYYGLDNEYLTWEDISRRKGLSRERVRQVGLVALE
KLKHAARNTKLAAMLVNH
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgatggctacaactgcagttatcggactaacagcaggaaaaagaatcttgtgttcatca
tcttactactctgatgtgaatgaaaagctatcctgcagtagcaatctggggttcacatat
gtccccactacaaatttgatctcttcaaagaagtcccccaactatacccatagtattaca
cgcagtcgagatacatctcctgtgagagctttgaaggaacatgtagatactactgtagct
cctccaattacagacaaatgggttcaggggtttgatcatctggatgaggaagtctctgag
catgatctcccagttgatgccctactcttattacacaaatctttgctggaaaaacagtgg
accctttcaactgatgctccaacaaaagataaaagcagcagaaaggtacatgtgactggt
tcaggggtatctgctcgaaggcgtagaataaatgctcaaaacaaaaaaccaactgtaaat
gaagatggtggaattggaaacaaacagttgagatccataatcagtccagaacttgttcaa
aactgtcagaaagggtatcttaaaggtatgaagaatgagaccttgctcactcactcagag
gtggttgctctatcagagaagatcaaaatcggtctacacttagaggaagagaagtcaaga
ctgaaagaaagattaggatctgaaccttcggagaagcaactagcagcttccttaaagata
tcccgagttgagttgcaagccaaacagattgagtgcagtttagcaagagagaagctggca
ttgagcaatgttggtctggtgatgtctgttgcactaaaatataaacacatgggagccgat
atgtctgacctaattcagggaggtctaattggactactgagagggatagagaagtatgat
tcatctaggggacacaagatttctacatatgtctattggtggatacgccagggtgtgaca
agaacattctttgaaaattcaagaaccctaagattgcctactcacttgcatgaaagactt
ggtgcaatccgaaatgccaaggccaaattagagcgaaagggaatcaccccatcaatagat
aaaattgcggagacactgaatatgtctagaaaaaaagttacaaacgccactgaggcagtt
tgtaaagtgttctcactcgataaagaagctttcccttctttaaacggacttcctggagaa
actcttcacagttacatagcagacgattgccctgaaaacgacccgtggcatggagtagac
gagggcgctctcaaggatgaagtaagaaatctaattaaaatgacactaggggaaagggaa
agagagattatccatctttactatggtttggacaatgagtatcttacttgggaggatatc
agtcgaaggaagggattgtcgagggaaagagtgaggcaggttggccttgttgcattggag
aaattaaaacatgctgcaagaaatacgaaactggctgcaatgctggtcaaccattaa
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