Lactuca sativa (garden lettuce): 111892307
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Entry
111892307 CDS
T05352
Name
(RefSeq) ubiquitin receptor RAD23b
KO
K10839
UV excision repair protein RAD23
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03420
Nucleotide excision repair
lsv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111892307
09124 Replication and repair
03420 Nucleotide excision repair
111892307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
lsv03051
]
111892307
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111892307
Proteasome [BR:
lsv03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
111892307
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111892307
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Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
CUE
TECR_N
UBA_3
UBA_RAD5A
Ubiquitin_2
Dsc3_N
Rad60-SLD_2
Orthopox_A5L
Motif
Other DBs
NCBI-GeneID:
111892307
NCBI-ProteinID:
XP_023744149
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Position
4:147117940..147120722
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AA seq
356 aa
AA seq
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MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS
DNKVSEEGFLVVMLSKTKSSTSGGTSSTQPLPTTASASNPTSTSSSIPATATVTPPAAPP
VISDTYGEAASNVVVNNSSVDQTVQHIMDIGGGVWDKETVTRALQAAYNNPERAIDYLYS
GIPDTVEVAVPVTQLPTTQVAPLSGGPNSSPLNLFPQEMPSSGTGGNLGSLDFLRNNQQF
QALRTMVQSNPQILQPMLQELGKQNPQLLGLIQENHAEFLQLINEPVDASEGDLFDQPDQ
EMPHAISVTPEEQEAIERLEAMGFDRTLVIEAFLACDRNEELAANFLLENAGDYED
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgtaaagactcttaaagggagccactttgaaattagggttcagccttcc
gacactattatggcagtcaagaaaaacattgaagatgtacaaggaaaagataattatcca
tgtgggcagcagttattgattcacaatggtaaggttctaaaagacgaaactacattatca
gataacaaagtctcagaagaaggttttcttgttgtcatgctaagcaagactaaaagttct
acctcaggtggaacttcatctactcagccccttccaacaactgcatcagcttccaatccc
accagtacatcttcttctatcccagcaacagcaacagtaacaccacctgctgcaccacct
gttatttctgatacatatggtgaagctgcttcaaatgtagtagtcaacaatagtagtgtt
gaccaaactgttcaacacataatggacataggaggtggggtttgggataaggaaactgtt
actcgtgcactacaagctgcttacaataatccagaacgagcaattgattatttatattct
ggtattccagatacagtagaagttgcagttcctgtgactcaactccctactactcaagtt
gcacctctttctggaggacctaattcatctcctttgaacttgtttcctcaggaaatgcct
tcaagtggtacaggtggcaatcttggatctcttgattttcttagaaacaaccaacagttc
caagcattgcgaactatggtgcaatcaaatccacaaatactacagcctatgcttcaagag
cttggaaaacaaaaccctcagcttttaggattaatccaagaaaatcatgctgagtttctt
caactaattaatgaacctgtagatgcttctgaaggggatctgtttgatcaaccggatcag
gaaatgccacatgctatcagtgttactccagaagaacaggaggcgattgaacggcttgag
gcaatgggttttgatagaactcttgttattgaggcgtttttagcatgtgatcgaaatgag
gaattggcagctaactttttattggagaatgctggtgattatgaggactaa
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