Lactuca sativa (garden lettuce): 111892399
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Entry
111892399 CDS
T05352
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K14485
transport inhibitor response 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111892399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111892399
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111892399
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
111892399
NCBI-ProteinID:
XP_023744217
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Position
4:92129822..92133499
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AA seq
594 aa
AA seq
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MDPNQKRAKVVDRVDSVDTGVASFESTRMCPFPDEVLERVLSLIDSNKDRSSVSLVCKDW
YNAERWSRRHVFIGNCYSVSPEIVAARFPRIQSVTLKGKPRFSDFNLVPEDWGADIQPWL
SVFATAYPFLEELRLKRMAVSDESLEFLATNFQGFKALSLLSCDGFSTDGLKAIATHCKN
ITELDIQENGIDDLGGHWLSCFPESLTSLEVLNFASLNSEVSFEALEKLISRSKSLRVLK
VNRNISLDQLQKLLLQAPQLMELGTGTFMQELVSGPLTDLKNTFSNCKKLITLSGLWDAT
SLYLPVIYPACVNLTFLNLSYATLRSGELSNLLSHCKSLRRLWLLDTVGDKGLEAVGSSC
PLLEELRVFPADPFDQEIFLGVTESGFVSVSQGCPKLRYVLYFCRQMTNAAVATIARNCP
GFTHFRLCIMNPGQPDYLTKEPMDEAFGSIVKACPNLQRLAVSGQLTDRTFEYIGKYSKK
LETLSVAFAGSSDLGMEYVLGGCPKLRKLEIRDCPFGNGALLSGLTKYESMRSLWMSACN
VTMNGCRVLAKERPRLNVEVMKEEGGDDGEAHKVYVYRTVAGPRKDAPPFVLTL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaatcagaagagagccaaagtggttgaccgagttgactcggtcgacaccggt
gtagcatcgttcgagtcgactcggatgtgcccattcccggatgaggttctagaacgagta
ctgtcgctaatagactccaacaaggaccggagctcggtgtcactggtttgtaaagattgg
tacaacgccgagcgctggagcaggcggcacgtgttcatcggtaactgctactcggtgtcg
ccggagattgtggctgctaggtttccgaggattcagagcgttacccttaagggaaaaccc
aggttttcggatttcaatttggtaccagaggattggggagccgacattcagccatggctg
agtgtattcgctactgcgtatccattcctagaggagctcaggctgaagagaatggctgtt
agcgatgagagtttggagtttcttgcaacgaattttcaaggttttaaagccctatcgcta
ctgagctgtgatgggttcagtactgatggactaaaagctattgctactcattgcaagaac
ataacagagctcgatattcaagaaaatgggatcgatgatcttggaggccattggttaagt
tgcttcccagaaagcttaacctcattagaagttctcaactttgcaagcttaaacagcgaa
gtcagtttcgaagccctagaaaagctcatttcaagatcaaaatctctaagggttttgaaa
gtgaatcgaaacataagtttagatcaattacaaaagcttcttttacaagctccacagttg
atggagttaggtacaggaactttcatgcaagaacttgtttcgggcccacttactgatctc
aaaaatacatttagcaactgtaaaaaactcatcactctttcggggttatgggatgccacg
tcactttatcttccagttatttaccctgcgtgtgtcaatctcacgtttttaaatctgagt
tatgcaactttacgtagtggtgaactttcaaatcttctttctcattgtaaaagccttcgt
cgcctttggcttcttgatactgtaggagacaaaggtctagaagcagttggatccagctgc
ccgttacttgaagaactccgggtttttccagccgacccgtttgaccaagagatctttctc
ggggtgaccgaatcaggattcgtctctgtttcccaaggctgcccgaaactccgttacgtc
ctctacttctgtcgccaaatgacaaacgcagcggtcgccacgattgcccgaaactgcccg
ggattcacgcacttccgtctctgcatcatgaacccgggtcaacccgattacctcacaaaa
gaaccaatggacgaagcgttcgggtccatagtcaaagcctgcccgaatctccaacgcctt
gcggtttccgggcagttaactgaccggacgtttgaatacatcgggaaatactcgaaaaag
cttgaaacgctttcggttgcgtttgcgggcagcagtgatttggggatggagtatgtgttg
gggggctgcccgaaattgaggaagctggagatacgagactgcccgtttggaaacggggcg
ttgctttcgggtttgactaaatatgagtcgatgaggtcgttgtggatgtcggcttgtaat
gtgactatgaatgggtgtagggtgttggctaaagagagaccgaggttaaatgttgaggtt
atgaaggaagaaggtggtgatgatggtgaggctcataaggtttatgtttatcgaactgtg
gcgggcccacgaaaggatgcaccaccttttgttctaaccctatga
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