Lactuca sativa (garden lettuce): 111892457
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Entry
111892457 CDS
T05352
Name
(RefSeq) RNA-binding protein BRN1 isoform X1
KO
K13207
CUG-BP- and ETR3-like factor
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111892457
Spliceosome [BR:
lsv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
111892457
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
RRM_occluded
BRAP2
Motif
Other DBs
NCBI-GeneID:
111892457
NCBI-ProteinID:
XP_023744264
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All DBs
Position
5:complement(368685116..368688050)
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AA seq
408 aa
AA seq
DB search
MAEGQKPRKHSDESVKLFVGQVPKHMTEAQLAAMFEEFAHVDEVNIIKDKATRASRGCCF
VICPSREEADKAVDACHNKRTLPGASCPLQVKYADGELERLEHKIFIGMLPKNVSEGEVS
ALFSQYGSLKDLQILRGSQQTSKGCAFVKYETKEQAVAAIEDLNGKHKMEGSTVPLVVKW
ADTEKERLARKAQKAQSLASNMANADPTQHPSLFGALPMGYMSPYNGYGYQVQAAGSYGV
MQYRLPPGQNQRGGSGTPRNYAVSPAGGYVGSVYHPPAQYPVAYPPQQGQGIMSSGPPSP
VPPPSSVSSGSPPGDQVEGPPGANLFIYHIPQEFGDEELANAFQGFGRVLSAKVFVDKAT
GVSKCFGFVSYESPSAAQSAISVMNGYQLGGKKLKVQLKRDNKLNKAQ
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtcagaaaccgcgaaaacacagcgacgagagcgtgaagttgttcgttggc
caagttccgaagcatatgacggaggcacagcttgctgcaatgttcgaagaatttgctcat
gtcgacgaagtcaacatcatcaaagacaaggctacgcgagcttctcgaggttgttgtttt
gttatatgtccatctagggaggaagcagacaaggccgtggatgcgtgtcacaataaaaga
actctccctggggcatcttgtccattgcaagtcaagtatgcagatggcgagctggaaagg
ctagaacacaaaatcttcattggtatgcttccaaagaatgtttccgagggagaagtttca
gcattgttttctcaatatggaagcctaaaagacttgcaaattttacgaggctctcaacaa
acaagcaaaggttgtgcttttgtgaaatacgagacaaaagaacaagcagttgcagctata
gaggaccttaatggaaagcacaagatggagggttcaactgtccctttggtggtgaaatgg
gcagacaccgaaaaagaaagattagctcgaaaggctcaaaaagcacaatcactagcttct
aatatggcaaacgcggaccccacacaacatccatctttatttggagctctacccatgggt
tacatgtcgccatataacggttatggatatcaggttcaggctgctggaagttatggggtt
atgcagtataggcttccaccagggcaaaatcagcgaggtgggagtgggaccccaagaaat
tatgcagtgtctccagctggtgggtatgtggggtccgtatatcatccgccagctcaatat
cctgtggcttaccctcctcagcagggtcaggggattatgagcagtggcccacctagtcct
gtcccaccaccttcaagtgtcagcagtggaagccctcctggtgatcaggttgaaggtcca
cctggcgccaatctgtttatttatcacatccctcaagagtttggtgatgaagagcttgca
aatgcttttcagggatttggaagagtcttgagtgctaaagtttttgtagacaaagcaacc
ggtgttagcaaatgcttcgggtttgtgagttatgagtcgccatctgctgcacaatctgca
attagtgtgatgaatgggtaccagttaggtggtaaaaaattgaaggttcaactgaaaaga
gacaacaagctaaacaaagctcaatga
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