Lactuca sativa (garden lettuce): 111892538
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Entry
111892538 CDS
T05352
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03030
DNA replication
lsv03420
Nucleotide excision repair
lsv03430
Mismatch repair
lsv03440
Homologous recombination
lsv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111892538
03420 Nucleotide excision repair
111892538
03430 Mismatch repair
111892538
03440 Homologous recombination
111892538
03460 Fanconi anemia pathway
111892538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111892538
03032 DNA replication proteins [BR:
lsv03032
]
111892538
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111892538
Transcription factors [BR:
lsv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111892538
DNA replication proteins [BR:
lsv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111892538
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111892538
MMR (mismatch excision repair)
111892538
DSBR (double strand breaks repair)
HR (homologous recombination)
111892538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
zf-like
TMEM219
Motif
Other DBs
NCBI-GeneID:
111892538
NCBI-ProteinID:
XP_023744358
LinkDB
All DBs
Position
5:298857449..298860319
Genome browser
AA seq
615 aa
AA seq
DB search
MPVNLSSNGIPAILAGDMNSKPLLQILDIKPINSSQERYRLILSDSVLTQQTMLATQLND
RVKNGAVRVGSVVQLIEYICSTVQNRKIIVVLNMETIIPECEIIGNPKMLTESDTISHNP
PPNGISHHTPPPSNHRPNPTNIQTFRPTVQPPYQPPPIYKPHGAITKNEAPPRIIPITAL
NPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDSGEIRVTCFNSVVDRFYDTI
EVGKVYIISKGSLKPAKKNFNHLNNEWEIFLESSSTIDLCTDEDSSIPQQQFSFKPISEI
ETLENNSIIDIIGIVTSVNPSVPILRKNGMETQRRILTLKDQSSFSVELTLWGDFCNREG
QTLQELVNSSLTPVLAVKSGKVNDFTGKTIGTLSSTQLFIDPESSEADNLRSWFNTRGKN
VISQSISRETGSKTETRKTVSQIKDEGLGRSEKPDWVSIKATLIFIKTDNFCYTACPLTI
GDRKCGKKVTKSGGLKWQCDRCNKEFEECDYRYLLQCQVQDHTGLTWVTAFQECGEEILG
CPAKELYVMKYEEQDDERFEELIKSRLFAEVIFKLKIKEEVYGEEQRVKITVVKVDKVDY
ASNTKFLLDLIKMKR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaatttgtcatcgaacggtattccggcgattctcgctggcgacatgaattcg
aagccgttgctacagatattagatatcaaacccatcaattcatcacaggagaggtaccgt
ttgattctctccgattccgtgttgactcagcaaacgatgctcgctacgcagcttaatgat
cgagtcaaaaacggcgctgttcgtgtaggatccgttgttcaactcatcgagtacatttgc
agcacagttcaaaatcgcaagatcattgttgttctaaacatggaaaccattatacccgaa
tgtgaaatcattggaaacccaaagatgctcacagagtctgacaccatctctcacaatcca
cctcctaatggcatctcccaccacacaccaccaccctctaaccaccgcccaaatcccacc
aacattcaaaccttccgcccaactgtccaaccaccataccaaccaccaccaatctacaaa
ccccacggagcaatcacaaaaaacgaagcaccaccacgcatcatcccaatcaccgccctc
aacccctaccaaggccggtgggccatcaaagcaagagtcaccgccaaaggagacctccgg
cgatacaacaacgcgaaaggggacggaaaagtcttttccttcgacctcctcgattccgat
tccggtgaaatacgtgtcacgtgtttcaattccgttgttgaccgattctatgacactatc
gaagtaggaaaagtttatatcatttcaaaaggtagtttaaaacccgcaaagaaaaacttc
aaccatttaaacaacgaatgggagattttcctcgagtcctcttccacaatcgatctttgc
acagatgaagattcttcaatcccacaacaacagttttcattcaaaccgattagtgaaatc
gaaacacttgaaaacaattcaatcatagacatcattggaatcgtaacatcagtcaaccct
tctgttccaatcttgagaaaaaacggaatggaaacacaaagaaggattttaaccctaaaa
gaccaatcaagtttcagtgtggagttaacactttggggggatttctgcaatcgagaaggt
caaacccttcaagaattagtcaactccagtttgacccctgtcttagcggtcaaatccgga
aaagtcaacgacttcaccggaaaaacaatcggaaccctttcatcaactcaactcttcatc
gatccggaatcttccgaggccgataacctaagatcctggttcaacaccaggggcaaaaac
gtcatttcccaatcaatctcccgcgaaaccgggtcgaaaaccgagacccgtaaaaccgta
tcgcaaatcaaagacgagggtctcggccgatccgagaaaccggattgggtttcgataaaa
gcgacattaatttttataaaaactgataacttttgttacactgcatgtccattaacaatt
ggggatcgaaaatgtggcaagaaagtgacaaaatcagggggtttaaaatggcaatgtgac
aggtgtaataaggaatttgaggagtgtgattataggtatcttcttcaatgtcaagttcaa
gatcatactgggttgacttgggtgactgcttttcaggaatgtggggaggagattttgggg
tgtcctgcaaaagagctttatgtgatgaaatatgaagaacaggatgatgaacgttttgag
gagttgattaaaagtcggctttttgctgaggtgattttcaagttgaaaattaaggaggag
gtgtatggggaagaacagagggtgaagattactgttgtgaaggttgataaggtggattat
gcttctaacaccaagtttcttctggatttgattaaaatgaagaggtaa
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