Lactuca sativa (garden lettuce): 111892889
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Entry
111892889 CDS
T05352
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111892889
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Meiosis-specific proteins
Others
111892889
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_19
AAA_27
Motif
Other DBs
NCBI-GeneID:
111892889
NCBI-ProteinID:
XP_023744725
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Position
3:947461..953193
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AA seq
799 aa
AA seq
DB search
MEDDTGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSEYIETSSSYQNTKTLLHFYDPM
AIIVPPNKLAAPDGMVGVSELVDKFYSSILKVTMHRGCFDDTKGAVLVKSLAAKEPSALG
LDTYYKQYYLCLAAAAATIKWIEAEKGIIITNHSLLVTFNGSFDHMNIDATSVHNLEIIE
PLHSTLLGTSNKKRSLFQTLKSTRTAGGTRLLRANLLQPLKDIETIKARLDCLDELMSNE
QLFFGLSQALQKFPKETDRVLCNFCFKRKKVTNEVLGGIDNARKSQVVIGNIIILKTALD
ALPFLSKVLKDANSFLLANIYKSVCANEKYACMRKRIGEVIDEDVVDARVPFVARTQQCF
AVKAGIDGFLDIARRSFCDTSQAIHNLANKYREDYKLPNLKIPFNNRHGFYFNIPLKDIQ
TQGKLPTKFIQVAKHGNSIHCSTLDLASLNARNKSAAKECYLRTQVCLEALAALMDAIRE
DVSVLTLLAEILCLLDMIVNSFAHMISTKPVDRYTRPHFTENGPLAIDAGRHPILESVHT
DFVPNNIFLSEASNMVIVMGPNMSGKSTYLQQICLIVILAQIGCYIPARFATLRVVDRVF
TRMGTLHNLESNSSTFMTEMKETAFILQNISERSLVVMDELGRATSSSDGFAIAWSCCEQ
LLSLKPYTIFATHMEKLSQVASIYPNVKILHFNVEVKNNRLDFKFELKDGRRHVPHYGLL
LAGVAGLPTSVIETAKNITSRITEKEGKRKELNYEAYEGIQMAYTVAQRLICLKYSTQDE
DSIRQALEHLKTTNLQNFR
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgacacgggagagcgatcaagcttcgtcattggactcatagagaatcgagct
aaggaggttggagtggctgcttttgacttgaggtcggcttcacttcacctgtctgaatac
attgaaactagcagctcctatcaaaacacgaagacactgctgcatttctatgatccaatg
gcaattattgtcccccctaacaagctagcagcacctgatggcatggttggggtatcagaa
ttagttgataaattctattcctcaattctaaaggtcactatgcatcgtggttgctttgat
gatacaaagggagctgtgctggtaaaaagtttagctgctaaagaaccttctgcacttggc
ctggatacttattacaagcaatattatctctgcttggctgctgctgcagcaactatcaag
tggattgaagcagagaaaggaatcatcattacaaatcattcattgttagtgactttcaac
ggatcatttgaccatatgaatatcgatgcaacgagtgtacataacctggagattatagag
ccactgcattctacacttttgggcacaagcaacaaaaagagaagtttattccagactctc
aagtcgacaagaactgctggagggactagacttcttcgtgccaatctgttgcaacctttg
aaagatatagaaaccatcaaagctcgacttgattgcctggatgaattaatgagtaatgaa
cagctgttttttgggctgtcacaggctcttcaaaagtttccaaaagaaactgacagggtc
ctctgtaacttctgcttcaagaggaagaaagttaccaatgaggtcttggggggcattgac
aatgctagaaagagccaggttgtaataggaaacattattattctgaaaacggctctggat
gccttgccatttctctccaaggtactgaaagatgcaaacagctttcttcttgcaaatata
tacaaatctgtttgcgcaaacgagaaatatgcttgtatgaggaaaaggatcggggaggtg
attgatgaggatgtagttgatgcaagagttccttttgttgcgcggacacagcagtgtttt
gctgtgaaggccgggatcgatggatttcttgatattgcacgaagatccttctgtgacacc
agccaagctatacacaaccttgcaaataagtatcgtgaagattataagcttccgaatttg
aaaatcccattcaacaataggcatggcttttacttcaatattcctctcaaggacatacag
acacagggaaagcttcccaccaagttcattcaggttgccaagcatgggaacagtatacat
tgctcaactctggatcttgcttctttaaatgcaagaaacaagtctgcagcgaaagaatgt
tatctgcgtacacaagtttgcttggaagccttagcagcactaatggatgcaattcgggag
gatgtgtcggtgctgaccttgcttgctgagatcctatgcctattggatatgattgttaat
tcatttgctcacatgatttcaaccaagcctgtagatcgatacaccaggcctcatttcact
gaaaatggaccgctggcaattgatgctggaagacaccctatactagaaagcgtgcacact
gattttgttcccaacaacatctttctttcagaggcttcaaacatggtgattgtcatgggg
cccaacatgagtggaaaaagtacataccttcagcaaatatgtctgattgtgatccttgct
caaattggttgttacattcctgcccggtttgcaaccctaagagtggtggatcgtgttttt
acaaggatgggcacactccataatcttgaatcaaattccagtacgttcatgacagagatg
aaagagacagcttttattttgcagaatatctctgaaaggagtcttgttgtgatggatgag
cttgggagggctacatcttcctctgatggttttgcaattgcatggagctgctgtgaacaa
ctcttatcactcaaaccttacacaatatttgccacacacatggaaaagctatcacaagta
gccagcatatatccaaatgtcaagattcttcacttcaatgttgaagtaaaaaacaatcgc
ttggatttcaagtttgagctgaaagatgggcggcgccatgtaccacattatgggcttcta
ttagcaggagtagcagggctaccaacttcagttatcgagactgccaaaaatatcacttca
aggattacagaaaaggaagggaagcgaaaggagttgaactatgaggcatatgaaggtatt
cagatggcatatacagtggctcagcgtctgatatgcttgaaatattccacccaagatgag
gattccatccgacaagcacttgaacatcttaaaaccaccaatttacagaattttagatag
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