Lactuca sativa (garden lettuce): 111893029
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Entry
111893029 CDS
T05352
Name
(RefSeq) cell division control protein 48 homolog D
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111893029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111893029
03009 Ribosome biogenesis [BR:
lsv03009
]
111893029
04131 Membrane trafficking [BR:
lsv04131
]
111893029
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111893029
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
111893029
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
111893029
Membrane trafficking [BR:
lsv04131
]
SNARE
SNARE associated proteins
Others
111893029
Autophagy
Aggrephagy
Other aggrephagy associated proteins
111893029
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111893029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
AAA_18
Parvo_NS1
Vps4_C
ATPase_2
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NB-ARC
AAA_24
NACHT
TsaE
Zeta_toxin
DUF815
ResIII
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
111893029
NCBI-ProteinID:
XP_023744871
LinkDB
All DBs
Position
1:65538632..65542292
Genome browser
AA seq
810 aa
AA seq
DB search
MSNQAESSDAKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVALHPETMEKLQLFRGD
TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRANLRVRLGDVVSVHQCADVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFMEAYRPVRKGDFFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPIRREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFATALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSQGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYSI
FKSALRKSPVAKDVDLHALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKKRSEN
PEAMEEDVEEDEVAEIKAAHFEESMKFARRSVSDGDIRKYQAFAQTLQQSRGFGSEFRFA
EASGGAAAAGGGADPFGAAAGGADDDDLYN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcaagcagaatcatccgatgctaaggggacaaagcgggacttcagtacggcg
attctggagcggaagaaggctgctaacagactcgttgtcgatgaagcaatcaacgatgat
aattctgttgttgccttacatcccgagaccatggaaaagcttcagttattcagaggcgac
accatcttgatcaagggaaagaaaaggaaagacacaatctgtatagctcttgctgatgac
acttgtgaagaaccaaagatcaggatgaataaggtagtcagagcaaatctcagagtcaga
cttggtgatgtagtctcagttcaccaatgtgctgatgtcaaatatgggaaacgtgttcac
attcttccaattgatgacacaatcgaaggcgtaacaggaaatctcttcgatgcttatcta
aaaccttacttcatggaggcatatagacctgtgagaaaaggtgacttctttcttgtaagg
ggaggaatgagaagtgtagagttcaaggtcatagaaacagatccaccagagtattgtgta
gtagcacctgatacagaaatcttctgtgaaggcgaacccataagaagagaagatgaagat
cggttagatgaaatcggttatgatgatgtcggtggggtccgcaaacaaatggcacaaatc
cgtgagctagttgagcttccattgagacacccacagctctttaagtcaatcggggtcaaa
cccccaaagggtattttactatacggaccccctggatccgggaagactttaatagctcgg
gcagttgctaacgaaaccggggctttctttttctgcatcaacggacccgaaatcatgtcg
aaaatggcgggagaaagcgagagtaatttgaggaaagcttttgaagaagctgaaaagaac
gctccatcaattatcttcatcgatgaaattgactcaattgcccctaagcgtgagaagaca
cacggtgaagttgaaagaagaattgtgtcacagttgttgactttaatggacgggttgaaa
tcgcgtgcacatgttattgtcatgggtgctaccaatcgtcctaatagcattgaccctgcg
ttgagaagattcgggaggtttgaccgggaaattgacattggtgtccctgatgagattggg
agacttgaagttcttcgtattcataccaagaacatgaaattagctgaagatgttgacttg
gagaagatttcgaaagagacacacgggtatgtgggtgctgacctggcggctttgtgtact
gaagctgcacttcagtgtattagagagaagatggatgtgattgatttggaagatgagtcg
attgatgcggagattttgaactccatggctgtaacgaatgagcactttgcaactgcactt
gggactagtaatccttctgctctccgtgagactgttgtggaagtgcctaatgttagttgg
gaagatatcggaggccttgagaatgtcaaacgtgagctccaagagactgttcaatatccg
gttgaacacccggagaaatttgaaaaattcggaatgtcaccatcaaagggagtcctcttc
tatggcccaccagggtgtgggaaaacactactcgcgaaagctatcgccaacgaatgccaa
gcaaacttcatcagcatcaagggaccagaactactcacgatgtggttcggtgaaagtgaa
gcgaatgtacgcgagatcttcgataaagcacgtgggtccgccccttgtgttctcttcttc
gacgaactcgactccatcgccacccagagaggaagtagtcaaggagatgcgggaggtgca
gcagatcgggttttgaaccaactgttaaccgaaatggacgggatgtcggcgaaaaagacg
gttttcataatcggtgcgacgaaccgaccggatataatcgacccggcacttttgagaccc
ggtcgactcgatcagttaatttacattcctctccctgatgaagaatctcgctattccatc
ttcaaatccgctttacgaaagtcgcccgttgcaaaggacgttgaccttcacgcccttgct
aagtacacccaaggcttcagtggcgctgacatcaccgaaatctgtcaacgcgcgtgcaag
tacgccatccgtgaaaacattgaaaaagatattgagagggagaagaagaggagtgagaat
ccggaggcgatggaggaggatgtggaggaggatgaggtggcagagataaaggcggctcat
tttgaagagtcgatgaagtttgcgcgaaggagtgtgagtgatggggatattaggaagtat
caggcgtttgcgcagacgttgcagcagtcgagagggtttgggtcggagtttaggtttgcg
gaggccagcggtggtgctgcggctgcgggtggtggagcggacccatttggtgcggcggca
ggtggtgctgatgatgatgatctttataattag
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