Lactuca sativa (garden lettuce): 111893096
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Entry
111893096 CDS
T05352
Name
(RefSeq) protein CNGC15b
KO
K05391
cyclic nucleotide gated channel, plant
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
111893096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsv04040
]
111893096
Ion channels [BR:
lsv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
111893096
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Motif
Pfam:
RRM_1
Ion_trans
cNMP_binding
IQ
RRM_MARF1
RRM_5
Motif
Other DBs
NCBI-GeneID:
111893096
NCBI-ProteinID:
XP_042751638
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Position
6:41447978..41455998
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AA seq
862 aa
AA seq
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MASSASTLQFLSLASSKTLSSLSKTPSPASLCLFPSSLKPLPKLFSIPTSSKLFEASPSS
RIFRSVAVSSGLELDEELSSDGDDEQQQNFSPDLKLFVGNLPFSVDSAALAGLFEGAGNV
EMVEVIYDKVSGRSRGFGFVTMSSVEEVERAVQKFNGYELEGRQIRVNSGPPPKREESSF
GSPREGGRFGGGGGGSRSFDNTNRVYVGNLAWSVDNLALETLFREQGNVVEAKVLSRVFS
EDYAKTKNTILDPRGTTLNQWNQVFLIAALVSLAVDPLFFYLPIIKDGMCLDEDITLKIS
LTIIRSIVDIFYAIKIYIRFRTAYVAPSSRLLGRGELILDSSSISQNYLRGEFWLDLMAT
LPVPQVMTWFHIIEKTEMISTKTSVLYFIMFQFVLRLCLTFRLGSQISKQAGLVANVAWV
GAAYNLVLFMLAAHVIGAMWYLLAIERQGLCWVEICDKETECMHNYFDCRNVNLPPREAW
FPNSNVSVICTNADIFQYGLVEDSVRYSIASANFFKKYSYCLWWGLRGLSSAGQELQASP
FIAETHFCILIGITGLVLFALLIGNMQQYLESRTKRLEEYRVKRMDTEQWMHHRHLPQEM
RERVRRHDLYKWITTRGVDEEEIIRALPVDLRRDVKRYVCAELVRRVPLFDQMDERTVDA
ICERLKPVICTPGTCLVREEDQTNEMLFIMRGRLDSYTTGGGRSGFLNQCEIGPGDFCGE
ELLTWSLDPRPSVIIPLSTRTVTAISEVEAFALTSKDLKFVATQFRKLHSKKLRHTLRVH
SHQWRTWAACFIQAAWKRYKTRKESAMLKAKETPLTSKSRKQTGLSLLATSIRKGRAFDV
DDVIRSPVPKPKDPEFLDDKNE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctgcatctacccttcaatttctatccctagcttcctctaaaaccctatct
tcactctctaaaaccccatctccagcttcactttgcctattcccttcctccctcaagcct
cttccaaagcttttctcgatacccacttcgagtaagctctttgaagcctcaccctcgtct
cgaatcttccgtagtgtagccgtttcatctggtttggagttggacgaagagctatccagt
gatggggatgacgaacagcagcagaatttctcccctgaccttaaactattcgtcggcaac
ttgccgttcagtgtcgacagcgccgctcttgctgggttgttcgagggtgctggaaatgtt
gagatggttgaggtcatatacgacaaagttagtggaagaagcagaggttttggctttgtt
acaatgtcatctgtcgaagaagttgaaagagctgttcagaagttcaatggctacgagctt
gagggaagacaaattagggtgaactccggacctccaccaaagagggaggaatcttccttc
ggaagcccaagagaaggtggccgttttggcggcggcggcggtggtagcagaagcttcgac
aacaccaacagggtgtacgtcggaaaccttgcttggagtgttgacaatcttgcccttgaa
actttattcagagagcaaggaaatgttgtggaagcgaaggttctttcaagagtattctca
gaggactatgcaaaaaccaaaaacacaattcttgatcctcgaggcacaactttgaatcaa
tggaaccaagtctttctaatcgcagctcttgtttcacttgctgtagatcctctcttcttt
tacttgccgataatcaaagatggaatgtgtctagatgaagatattaccctcaaaatatcc
ctcactatcatacgttcaatcgttgatatcttttatgcaatcaagatttacattcggttt
cgtactgcttacgtggcaccttcttctcgcttacttggaagaggagagctcattcttgac
tcttcaagtatttctcaaaactatctaagaggtgaattttggctcgacctcatggctaca
cttcctgtaccacaggtgatgacttggttccacatcattgaaaaaaccgagatgataagt
acaaaaacgagcgttttatactttatcatgtttcaatttgttctaaggctttgtcttaca
tttagactagggtctcaaatatcaaagcaagctggtcttgtggctaatgtagcttgggtt
ggggctgcttacaacctcgttcttttcatgttggctgctcatgttatcggagcaatgtgg
tatcttttagccattgaaagacaagggttatgttgggtggagatatgcgataaagaaacg
gaatgcatgcataattatttcgactgtcgtaatgtcaatcttccccctcgagaagcttgg
tttcccaacagcaatgtctctgttatttgtacaaatgctgacatctttcagtatggattg
gttgaagattcagtacgttacagtatcgcttctgcaaatttctttaaaaaatactcatat
tgtctatggtggggactccgagggttaagttcagcaggacaagaacttcaagcgagtcca
tttatagcagaaacacacttttgcatacttatcgggatcaccggactagtgctattcgcg
ttgctgatcggaaacatgcaacaatacctggagtcaagaactaaacgattagaggagtac
agggtgaaacgaatggatactgaacaatggatgcatcacagacacctccctcaggaaatg
agggaacgtgtacgcagacatgatctttacaaatggattacaactcgtggggttgatgaa
gaagagattattcgagcacttcctgtagatcttcggagagacgtcaaacgttatgtttgc
gctgagttagttagacgggttccgttatttgatcaaatggatgaacgaacagtggatgcg
atatgtgagagactaaaacctgttatatgcacacctgggacctgtttagttcgagaagag
gatcagacgaacgagatgttgtttataatgcgaggtcgtttagattcctacaccaccggc
ggcggtaggtccggtttcttgaaccagtgcgagattggtccgggagacttctgtggagaa
gaactgctgacatggtcattggacccacgtccgagtgttatcatcccgttatctacacgc
acagtcaccgccatttctgaggtggaagctttcgctctcacttctaaagatttgaaattt
gtcgctacacagttccgaaagcttcatagcaagaaactgcgacatactcttagggttcat
tcgcatcagtggaggacttgggcggcttgttttatacaagcggcatggaagaggtataaa
acaagaaaagagtcggcaatgctcaaggctaaagagactcctctcacttctaaaagtaga
aagcaaactggtttatcattattggcaacaagcataagaaagggtcgggcatttgatgtt
gatgatgtcattcgaagcccagtgccaaagcctaaggatcctgaatttttagatgataag
aacgaataa
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