Lactuca sativa (garden lettuce): 111893136
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Entry
111893136 CDS
T05352
Name
(RefSeq) WD repeat-containing protein ATCSA-1
KO
K10570
DNA excision repair protein ERCC-8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03420
Nucleotide excision repair
lsv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111893136
09124 Replication and repair
03420 Nucleotide excision repair
111893136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111893136
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111893136
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111893136
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
111893136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_Nup120_160
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
111893136
NCBI-ProteinID:
XP_023744971
LinkDB
All DBs
Position
4:complement(265101489..265105351)
Genome browser
AA seq
452 aa
AA seq
DB search
MWKEIGDRQSGKLRPNSFISRIRSNRASSLQLSNHKEIVSPHRGAINSLQVDLTEGRYLL
SGASDASLSVYDIQHTTDYEGGGLIAKHKPILHVDKQHQNGHKYAISTAIWYPIDTGLFV
TGSFDHHINVWDTNTSQVVMDFKMPGKVYRTAMSSLATSHMLIAAATEDVQVRLCDMASG
AFSHTLSGHRDGVMAVEWSACSEWVLMTGGCDGAIRFWDIRRAGCFSVLDQSHSQLGRRP
PLLERSTTKVTTSRSFSPGQTSSSKTRPPQKKATSKHSGGSRILRQGKQKQRLHPGLLSS
QDRATAHYGAVMGLKATEDGMYLLSAGSDSRLRLWDIESGCNTLVHFEITRLQTTKPIQL
AVTQDSALVFVPCMTSLKAFDLWSGKTSMTLQGHYEHVNCCCYNAYDQELFTGGNDRHIL
IWSPPKLISQDVDEWDGRTGKPPALDEDNWSD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcggagatagacaatcgggaaaactacgccctaattctttcatcagt
cgtattcgatcgaacagagcatcatctcttcaactctccaatcacaaagagattgtctct
cctcaccgtggcgccattaattcgcttcaggttgatttgacagagggaagatatttgtta
tctggagcatctgatgcatcactttctgtctatgatatccaacatacaacagactatgaa
ggaggtggtttgattgctaagcataagcccatactccatgtcgataagcagcaccaaaat
ggtcacaaatatgccatatccacagccatatggtatccaattgatacaggtctttttgtc
acaggctcgttcgatcaccacatcaatgtctgggataccaatacctcacaggtggtgatg
gattttaagatgccaggaaaggtttataggacagccatgtcttcattagccacatctcac
atgcttatagctgctgcaactgaagatgttcaggttcggctttgtgatatggcttcaggg
gcattttctcacacattgtcgggtcatcgtgatggcgtgatggcagtggagtggtctgct
tgtagtgagtgggtgttgatgactggaggttgtgatggggcaataaggttttgggatatt
agacgtgcaggatgtttttctgttttagatcaatctcactctcagcttggaaggcgtcca
cctctacttgagaggtccaccactaaggtgacaacatctagatccttttcacctggtcaa
acatcatcttccaagactcgaccaccacagaaaaaagccacctcaaaacactctggcggc
agtaggattctccggcaggggaagcaaaaacagagactccatccagggttgttatccagc
caggatcgcgctacagctcattatggtgctgttatgggcctcaaagccacagaagatggc
atgtatcttctaagtgcagggtctgattcaaggttaagattgtgggacattgagtctggg
tgcaatacacttgtgcactttgagattacgcgattgcaaactactaaacccatacagttg
gctgtcactcaggattctgcccttgtctttgttccatgcatgacatctctcaaagcattt
gatctgtggtcagggaagactagtatgacacttcaaggacactatgagcatgtaaattgc
tgttgctataatgcctatgatcaggaactattcacaggtggaaatgacagacatatcctt
atctggtctcctccaaagttgatttctcaagatgtggatgaatgggatggaagaacaggg
aagcctcctgcacttgatgaggataactggagtgactga
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