Lactuca sativa (garden lettuce): 111893291
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Entry
111893291 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111893291 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111893291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111893291
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111893291
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111893291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DMAP_binding
Motif
Other DBs
NCBI-GeneID:
111893291
NCBI-ProteinID:
XP_023745123
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Position
2:138187999..138193018
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AA seq
877 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKARPPRLTHLESSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFIDDYVERNQEDFDEFEDVDMLYNTLSLDKVEA
LEDLVIIGPPGLVKGVGASVAVLSTKNALSSPPVQSPGASVQEQTEETLSQENISEHGPR
TPPPKAIAISSSPPTPSGTHATTPITVPTPSHNLTASSVPPSPSPVRGVLDNSVSTIPSS
PINKEEEVGGFPVRKSSPALSESGLRNLGRGSLTSLTSLTSQSSVTLPINPTNSNIISTN
NALGVSQASELAKRPMLGTDERMVQQHPPVSSLSSRIMLPQSGVKTSDGDNGNGGEGGGM
GTRVFSPSGVPGIQWRPGSSFQTQHEGGQFRGRTEIAPDQREKFLQRFQQVQQQGSSTLL
GMPPISGGTHKQFSTQQNPLLQQFNSQSSSGLGGAPPASPNTATSAQQQNLIHLQSSQQM
STVSKDSEINNSKVEEMEQQQQQQSVTSDDSAPDPAQSPVLNKNTSNEEDPKVSYALDMQ
GSGTMTEAAQSTRDVDLSPGQPLQSNQSVSLGVIGRRSLSDLGAIGDNLSGLAVSLGGTH
DQQYNLQMLESAFYKLPQPRDSERAKSYTARHPAVTPQSYPQVQAPIVNNPAFWERLGSD
NIGTDTLFFAFYYQQNAYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKFATDDYEQGTY
VYFDFHIGNDEMQNGWCQRIKTDFKFEYNFLEDELIV
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtagaaagcttcaaggtgagatcgatcgagtcctaaaaaaagttcaagaa
ggtgttgatgttttcgacagcatatggaacaaggtatacgatactgacaatgctaatcag
aaggagaagtttgaggccgacttgaagaaggagattaagaaacttcagaggtacagagac
cagattaagacatggatacagtccagcgagatcaaggataagaaggttagtgcctcttat
gagcaggctctgatggatgcccgcaagcttattgaacgagaaatggaacggtttaagatt
tgtgaaaaggagacaaagacaaaagctttctccaaagaaggcctaggacaacagcctaaa
acggatccaaaggagaaagccaagtcagagactagagattggttgaacaatacggtgtct
gagctggaatctcaaatcgatagctttgaagctgagatggaggggctatctgttaagaaa
ggaaaagcaagacctccaagactgacacatttagagtcatcaattgttcgacacaaggct
catataatgaagctagagttgatattacggttgttggataatgatgaattgagccctgaa
caagtcaatgatgttaaggacttcattgatgactatgtggaacgaaatcaggaggatttt
gatgagtttgaggatgttgatatgttatacaacaccttatcactagacaaagtagaagca
cttgaagatcttgttatcattggtccacctggcctcgttaagggtgttggtgctagtgtt
gctgttttaagtacgaaaaatgctttgtcttcacctccagttcagtcaccgggagcttca
gtacaggaacaaactgaggagacattatctcaggagaatatatcagagcatgggccacgg
accccaccaccaaaagccattgccatctcatcatctcctccaacaccatccgggacccac
gcaaccacccctattactgtccccaccccatctcataatctcaccgcctcttcagtccct
ccaagtccaagtccggtgaggggcgttttagacaattcagtctccaccatcccttcctca
cctataaacaaggaagaagaagtcggtggattccctgttcgtaaatcatctcctgctctt
agtgaatccggattaaggaatctcgggagggggagtttgaccagtttgaccagtttgaca
agtcagtcttcagttactctccctatcaaccctacgaatagtaacattatttctaccaat
aatgcccttggtgtttctcaagcttcggaactggctaagcgacctatgttagggacagat
gagagaatggttcagcagcatcctcctgtttcatctttgagtagcagaatcatgttgcca
caaagtggtgtgaaaactagtgatggtgataatggaaatggcggtgaaggtggtggcatg
ggcacaagagtcttttcaccctctggtgttcctggcatccagtggagacctggtagttcc
ttccaaactcaacatgaagggggacaattccgtggaagaactgaaatagcaccagatcaa
agggagaaatttctgcagagattccaacaagtacaacaacaaggaagcagcacccttctt
ggaatgcctcctatttctggaggaactcataagcaattttcaacacagcaaaaccctctt
ctacaacagtttaattctcaaagctcaagtggattgggtggggcaccgccagcaagtccc
aacactgccacgtcagcacaacaacaaaatctaatccatttacagtcaagtcaacaaatg
tcaaccgtttctaaagatagcgaaattaacaattcaaaagttgaggaaatggaacaacag
caacaacaacaaagcgttacatctgatgactcagcacctgatcctgcacaatctcctgtc
ctcaacaagaacacttccaatgaagaagatccaaaggtctcatatgcattagacatgcag
ggatctgggactatgacagaagcagcacaaagcacacgcgatgttgacctgtcacctggt
caaccattacaatcgaaccaatcggttagcctgggtgtgattggtagaagaagcctgtct
gacctgggtgcaattggagacaaccttagtgggttagccgtgtccttaggtgggacccac
gaccaacaatacaacctccaaatgctcgagtccgccttctacaaactcccccaaccccgt
gactctgaacgtgccaaaagctacactgcaaggcaccctgcagtgaccccacaaagctat
ccgcaagtgcaagctccaattgtgaacaacccggccttttgggaacgtcttggatccgac
aacattgggaccgatactttattttttgcattttattatcaacagaatgcttatcaacaa
tatctggctgcaaaagaattaaagaaacaatcatggaggtaccataaaaaatacaacacg
tggtttcaaagacacgaagagccaaaatttgctacagatgattatgaacaagggacgtat
gtgtattttgatttccacattggcaatgatgagatgcaaaacggatggtgtcaaagaatc
aagacagactttaaattcgagtacaattttcttgaagatgagctgattgtgtaa
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