Lactuca sativa (garden lettuce): 111893556
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Entry
111893556 CDS
T05352
Symbol
LOC111893556
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111893556 (LOC111893556)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111893556 (LOC111893556)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111893556 (LOC111893556)
mRNA degradation factors
5'-3' decay
Decapping complex
111893556 (LOC111893556)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111893556
NCBI-ProteinID:
XP_023745434
LinkDB
All DBs
Position
7:204108004..204112199
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AA seq
777 aa
AA seq
DB search
MERLGGGGDTQQLVDRRDPNQQLGSNSTGAVVFDASQYSFFGNEVLEEVELGGLEDEEED
LPAAKLEDEEYQLEQEEVTFLGMDDLSTTFSKLNKDVMGPSLGVYGDRGSRENSSAAELA
QGGELTNWFDQDNFYSENAHESNRWSSNSSFPPQDTSMLHQRTSNQYIHRTSSYPEQLQQ
QNPNHHLLEDSKNLHRTSSYPDQQQQNIGQHLTFPDPVPVPKSSFISYPPPVNPPYHGGP
PPSFSNISNPQLQMGGLPHPSHPPHGSQFGSNLGQFRPPANRVPNQFQPDLSNGMFAHKN
GLMPPQQHRLHPQFQGPFGHLPLMNHHLSPPPPMMNNFEPLGLGGPRDQRARPVSKIRPG
GPGPRFDTTGWPQFKSKYMSSDEIENILRMQLAATHSNDPYVDDYYHQAILANKSSGAKL
RHHFCPTQLRECAPRTRAANEPHAFLQVDALGRVSFSSIRRPRPLLEVDPPKSSTGPHDQ
KALDKPLEQEPMLAARVTIEDGICLLLDVDDIDRFVQFNQLQDGGGQLKQRRQVLLEGLA
TSLQLVDPLKNGNTVELATKDDLVFLRLVSLPKGRKLVESFLRHLSPGSELTRVVCMAIF
RHLRFLFGSGPADETVKKLARTVSSFVRGMELRALGACLASVVCSSEHPPLRPVGSPAGD
GASVVLKSVLERATELLTDPNSVNNCSMQNRAFWQASFDAFFGLLTKYCFSKYDTVVQTW
MTHGGGGGGGPGPSDVAAISREMPVELLRASLPHTNESQRKVLLDFAQRSMPVNNNG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaagattgggaggtggaggtgatactcaacaactcgttgatcgtcgggatcctaat
caacaacttggttcgaattccacaggcgctgttgtatttgatgcatcacagtattcattc
tttggtaatgaagttctcgaagaagttgagttgggaggtctggaagatgaagaagaagac
cttccagcagctaaacttgaggacgaagagtatcagctggagcaagaagaggttacgttt
ctgggcatggatgatctttccaccacattttcaaagctcaacaaagatgtcatggggcca
agtcttggagtttatggtgaccggggatccagagaaaattcatctgcagctgagttggca
cagggaggagagttgaccaactggtttgaccaggataatttttattccgaaaatgcccat
gaaagcaacagatggtcatcaaattcttcatttccacctcaagacacatcaatgcttcat
caaagaacatcaaaccaatatattcatagaacatcatcgtaccctgaacaactccaacaa
caaaaccctaaccaccaccttctagaagattctaaaaatctccacagaacatcatcatac
cctgatcaacaacaacaaaacatcggtcaacatttgacttttcccgacccggttcccgtt
cccaaatcttccttcatctcatacccgccccccgttaacccgccttaccacggtggccca
ccaccatctttctccaatatatcaaacccacagcttcaaatgggcgggttaccccacccg
tctcacccgccccacgggtcacaattcggttccaatctgggtcagtttcgtccacccgca
aaccgtgtcccgaaccaatttcaacccgatctttcgaacggaatgtttgctcataaaaac
ggtttgatgcctccccaacaacacagactacatcctcaattccaaggacctttcggtcat
ttaccactaatgaaccaccacctctctcctcccccaccaatgatgaacaactttgaaccc
ttagggttaggtggtccacgagaccaaagggctagaccagtttccaaaattagaccaggt
ggtccgggcccacgatttgacaccacagggtggccacagttcaaatcaaaatacatgtca
tcagatgaaatcgaaaacattctaagaatgcaacttgctgctacacacagtaacgacccg
tatgtagacgattactaccaccaagctattctagcaaacaaatcaagtggagcgaaatta
agacaccatttttgccctacacaattacgcgaatgcgccccgagaacccgtgctgcaaac
gaaccacacgcgtttcttcaagtcgatgcgttgggtcgggtctcgttttcctcgatccgt
cgcccgcgcccgcttctcgaagtcgacccgcccaaatcatccaccgggccccacgatcaa
aaagctttagacaaaccgctagaacaagagcccatgcttgcagccagggttacaatcgaa
gacgggatttgtcttttactagacgtcgatgacatcgatcggtttgtacagtttaatcag
ctccaagatggcgggggacagttgaaacaaaggcgacaggtccttctagaaggtttagcc
acatcactacagttagtcgacccgttaaaaaacggaaacacagtcgagttagctacaaag
gacgatttagtctttttacgtttggtctcccttccgaaaggtcggaagcttgtggaaagt
ttcctccggcatttgtcaccagggagcgagctgacacgtgtcgtatgcatggcgattttc
cgacatttaaggtttctattcgggagtgggcccgcggacgaaacggttaagaaactcgcg
aggacggtttcgtcatttgtacgcgggatggagcttcgggcgctcggtgcgtgtcttgca
tcggtcgtgtgttcgtctgagcatccgccgctccgcccggttggcagtccagctggcgac
ggggcgtctgttgttttgaaatctgtactggaaagggcgacggagcttttgaccgatccg
aattcggtcaacaattgcagcatgcaaaaccgtgcgttttggcaggcgtctttcgatgcg
tttttcggactgttgacgaagtattgttttagtaaatatgatacggttgtgcagacgtgg
atgacacatggcgggggcggtggtggtgggcccggtccgtctgacgtggcggcgataagt
cgggaaatgccagttgagcttttgcgtgcgagtttgcctcatacaaatgaaagtcaaagg
aaggtgttgttggattttgctcagcggtcaatgccggtcaacaacaatgggtga
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