Lactuca sativa (garden lettuce): 111893806
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Entry
111893806 CDS
T05352
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111893806
03036 Chromosome and associated proteins [BR:
lsv03036
]
111893806
Transcription factors [BR:
lsv03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
111893806
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111893806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Helicase_C_2
CTD2
Motif
Other DBs
NCBI-GeneID:
111893806
NCBI-ProteinID:
XP_023745658
LinkDB
All DBs
Position
2:35275676..35286875
Genome browser
AA seq
1422 aa
AA seq
DB search
MAADKCEEEEDLGSASSDSFINDSENDEPSTSGQDDGVHLEQPLTDEDIERLISELLTVE
SKAAEAQEALEDESLAKVEVEVRDELAQSLEGEELENAVADEMLALREKWEDELDDLETE
SAHLLEQLDGAGIELPSLYKWIESQAPNGCCTEAWKNRTHWVGSNVTNDATESIADADKY
LQTHRPVKRHHGKLLEEGASGFLQKRLAPEDDKESNKDVNWSSFNELCSSSSKNTSFGSK
NWASVYLASTPQQAAELGLNFPGVDEVEEIDDIEGSLDDPFVAAAVVTERELYKSEDHKN
IKKVKEEDDVNIDRKLLSRLNKKRQKKKLKQKGIKEAEEEDDISNDIANHRLNANHKTSS
NGVHAAVLSGSKRSSDSVEQSDSKKCRTDVEHVAVDGSTSPCSESETNDQSDHKGNGDAN
SPSGSSDEEFCCTACDKVANEVHTHPLLKVIVCRNCKYRLDEKMKETDPECSECFCGWCG
KNGDLVSCKSCKNLFCTSCIKKNLGEEYLLKAQESSWQCCCCTPSILQSLTSQLQKAFES
RSESSSSSSESDSDDSDDSDDNIKVPLSKRRRKKKIRRILDDTELGEDTKKKIAIEKERQ
ERLKSLEAERLKALKSMKTNYTSFRATVSDGTTVKVLGDAQTGYIVNVVREENEEAVRLP
PSISIKLKSHQVAGIRFLWENIIQSITKVRSGDKGLGCILAHTMGLGKTLQVIAFLYAAM
RSVDIGLKAAMIVTPVNVLHNWRHEFTKWRPTEFKPIRVYMLEDVPRDRRLELLMKWRSK
GGVFLIGYTNFRNLSLGKHIKDRHMAKEFCRTLQDGPDILVCDEAHMIKNTRADTTQALK
QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSQEFRNRFQNPIENGQHTNSTTDD
VKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIAVKLSPMQRVLYKKFLDVHGL
TEEKASQEKTRKSFFASYQALAQIWNHPGILQLMKDRNFGKRENVVENFLEDSSSDENLD
YTMANGDKIRNRKDQSTRKKVGGFFKENWWGDLLQENGYDAENSGKIVLLLDILTLCSDA
SDKALVFSQSLATLDMIERHLSKLPRKGKSRKCWKQGKDWYRLDGRTEGSERQKLVEKFN
DPSNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAY
RLMAHGTMEEKIYKRQVTKESLSARVVDRQQVHRTISKEEMLHLFAFGDDESLNTSYNKV
DQLGGNAATQFDPLLHATVSSDKFMEVLLSKHHPKWIANYHEHESLLQENEDEKLSKEEQ
DMAWEVYRRTLEWEEVQRNPVEGPTPVFKPTINEVEPEPEPEPEPRTKKPPRCTRVCSRD
RFVLRKCTNLAHMLTLRSQGVKQGCTTICGECGQEISWNGVK
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgataaatgtgaagaggaagaagatcttggaagtgcatccagtgactctttc
atcaatgatagtgagaatgatgagccctcaacatctggtcaagatgatggggtgcatctt
gagcaacctcttaccgatgaagacattgaaaggctaatttcagagctcttgacagttgag
agtaaggctgcagaggcccaagaagcacttgaagatgagtcacttgcaaaagtggaagtt
gaagtaagggatgagttagcacaatctcttgagggggaagaacttgagaatgctgttgca
gatgaaatgttagctttgagagaaaaatgggaagatgagcttgatgaccttgaaacagag
agtgctcacttgttggagcaacttgatggagcaggaattgaacttccaagcctttataag
tggatagaaagccaagctccaaatggatgctgtacagaagcatggaaaaataggactcat
tgggttggatcaaatgttacaaatgatgctactgaatcaattgcagatgctgacaagtat
ctgcaaactcataggcctgttaaaagacatcatggtaaattgttggaggaaggtgcaagt
ggatttcttcagaaacgccttgctcctgaagatgataaagaatctaataaagatgtaaat
tggtcatcttttaatgaattgtgttcttcatcaagtaagaacacttcatttggaagcaaa
aactgggcttctgtatacttggcaagtactccacaacaagctgcagaactgggacttaac
tttcctggtgtagatgaggttgaggagattgatgatattgaaggcagtttggatgaccct
tttgttgctgctgctgtagtgacagagagagaactgtataaatctgaagatcataagaac
attaaaaaggttaaagaagaagatgacgtaaatattgatcgtaagcttctatcccgtttg
aacaaaaagagacaaaaaaagaagttaaagcagaagggtatcaaggaagctgaggaagaa
gatgatatcagtaatgatattgcaaatcacagattaaatgccaatcacaagacgtcaagt
aatggtgttcatgcagcagtgctttcagggtcaaaacggtcatctgacagtgttgaacaa
tctgatagcaagaagtgcagaaccgatgttgaacatgttgcagtggatggatctacttct
ccatgcagtgaaagtgaaacaaatgatcaaagtgatcacaaaggaaatggagatgctaat
tctccttcagggagttcagatgaggaattctgttgtacagcttgtgataaagttgctaat
gaagtgcatacacatccacttttgaaagtcattgtatgcagaaactgcaaatatcgatta
gatgagaaaatgaaagaaacggatcccgaatgttcagagtgtttctgtggatggtgtgga
aaaaacggggatttagtaagctgcaaatcatgcaaaaacttgttctgtacttcctgtata
aagaagaatcttggagaagaatatttgctaaaagcacaggagtccagctggcaatgctgt
tgctgcaccccaagtatcctgcagtcattaacttcacagttacagaaagcctttgaatct
agaagtgaatcatcatcttcaagttcagaaagtgattcagatgactctgatgattcagat
gacaatatcaaggttccccttagcaaaaggagaaggaagaagaaaattcgaagaatcctt
gatgatactgaattaggagaagatactaaaaagaagattgcaatcgaaaaggaacgacaa
gaacgacttaaatcactggaagctgagcgtttaaaggcactaaaatccatgaagacaaat
tatacaagctttagggcaactgtatctgatggaactactgttaaagtgttgggtgatgca
caaactggctatattgtaaatgttgtgagggaggaaaatgaagaggctgtgaggttgcca
cctagcatctcaatcaaattgaaatctcatcaggttgcaggcataaggtttttgtgggaa
aatattatacagtcgattacaaaagtgaggtcaggggataagggacttggttgcatactt
gcacataccatggggttaggtaaaaccctacaggttatagcttttctgtatgctgctatg
agaagtgttgatataggattaaaagctgctatgattgttacacctgtaaatgttttgcat
aactggaggcatgagtttacaaaatggagacctacagagtttaagcctattcgtgtctac
atgcttgaagatgtcccaagggatagaagacttgagttgctaatgaagtggagatctaaa
ggtggtgttttcttgattggttatactaattttcgtaacttgtctcttggaaaacatatc
aaagatcgccacatggctaaggaattttgtaggactcttcaggatggacctgacatactt
gtgtgtgatgaggcccacatgattaagaacacaagagctgatacaactcaggccttaaaa
caagtgaaatgccagaggcgaatagcattaacagggtcacctcttcaaaataacctcatg
gagtattattgtatggttgattttgtgagggaaggatttcttggcagcagtcaagagttt
agaaatcgcttccaaaaccctattgagaatgggcaacacacaaattcaacaacagatgat
gtaaaaatcatgaaccagagatctcacattctctatgaacaactaaagggatttgtccaa
agaatggatatgaatgttgtgaagaaggatttacctccaaaaactgtttttgtaattgct
gtgaagctttctcctatgcaaagggtactttacaaaaaattccttgatgttcatggactc
actgaagagaaggcttctcaagaaaaaaccaggaagagttttttcgccagttatcaggca
ttggctcagatatggaatcatcctggaatattacaactaatgaaagatagaaactttggg
aaacgtgaaaatgttgttgaaaattttcttgaagacagttctagtgatgagaatttggat
tataccatggccaatggagataaaataaggaacagaaaggaccaatcaactagaaagaaa
gtcggtggctttttcaaagagaattggtggggtgatcttctacaggagaatggctatgat
gctgaaaacagtggtaaaattgttttactgcttgatattttaaccttgtgttctgatgct
agtgataaggcactggttttcagtcaaagtttagccactcttgatatgattgaacgccat
ctgtccaaattaccccgaaaagggaaaagccgaaaatgttggaaacagggaaaagattgg
tacaggctagatggaagaactgaaggatcagagagacaaaaactggttgagaagttcaat
gatccttcaaataagagggtcaaatgcactttaatatcaaccagagctggatctcttggt
attaatctgtatgctgctaatcgtgttattattgttgatggatcttggaacccaacgtat
gatcttcaggctatttatcgagcttggagatatggacaaacaaagcctgtgtttgcatac
cgtttaatggcacatgggactatggaagaaaagatttataagcgtcaggttacaaaggag
agtctttcagcaagagtggttgatagacaacaagtacatagaacaatatctaaagaagag
atgttgcatctgtttgcctttggtgatgatgaaagcctaaatacatcatataataaagtt
gaccaactcggtggcaatgctgctacacaattcgatcctcttcttcatgcaactgtttct
tccgacaagttcatggaagtattactcagtaaacatcaccccaaatggattgcaaattat
cacgaacatgaaagtcttctccaagaaaacgaagatgaaaaactatcaaaagaagaacaa
gacatggcatgggaagtatacagaagaaccctagaatgggaagaagtgcaaagaaacccg
gttgaagggcccacacccgttttcaaaccaaccatcaacgaggttgaacccgaacccgaa
cccgaaccggaacccagaaccaagaagccacctcggtgcacccgggtgtgttcaagggac
cggtttgtgttaagaaaatgcacaaacttagcccatatgttaaccttaaggagccaaggt
gtgaaacaagggtgcaccactatttgtggtgaatgtgggcaggaaattagctggaatggt
gttaaatag
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