Lactuca sativa (garden lettuce): 111893934
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Entry
111893934 CDS
T05352
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111893934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111893934
03036 Chromosome and associated proteins [BR:
lsv03036
]
111893934
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111893934
Coactivators
SAGA/TFTC/STAGA complex
111893934
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111893934
STAGA complex
111893934
TFTC complex
111893934
SAGA complex
111893934
SLIK complex
111893934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_IP5PC_F
RAB3GAP2_N
LisH
WD_LRWD1
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
111893934
NCBI-ProteinID:
XP_023745781
LinkDB
All DBs
Position
6:137573328..137578383
Genome browser
AA seq
674 aa
AA seq
DB search
MDEEVLDKAVYLYLKKKGFTQTEQIFQQEQQNKNNKNSSSSITATDVSLSDPDLAKQILT
FSQSESIPTLYHDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLIAKSHLQEARAF
FNNFREDHEMMHSRDLTKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSYDLLLQYLHK
TQSITMLGIINEHIDFQVSPGQPSSISDDAEAFSLVGSGQDAANLINQKEIHWGLLEDSL
EDRLDKAGGLLSDSEKTEGEGKEGELDENKKKSTEGGKQGGPLKKLKKDKVVGGAGKAAR
GEGEKSTAAPRVKPELTLPTISTDVEHSILEDLRNRVQLNNSTLPSVSFYTFINTHNGLN
CSSISHDGSLVAGGFSDSSLKVWDMAKLGRMGSSVLQGENDENTHGSNNGKRSYTLYQGH
SGPVYSASFSPFGDFLLSSSSDSTIRLWSTKLNANVVCYKGHNYPVWDVQFSPLGHYFAS
ASHDRTARIWSMDRIQPLRILAGHLSDVDCVQWHMNCNYLATGSSDKTVRLWDVQSGECI
RIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDVSNGRCVTPLVGHTSCVWSLAFSCE
GSLLASGSADSTVKLWDVNTSVKPPKTEDNKSGNTNTNRLRSLKTLTTKSTPVYALRFSR
RNLLFGAGALSTNV
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagtgttggataaagctgtatatttgtatctaaagaaaaagggattcacc
caaactgaacagatttttcaacaagaacaacaaaacaagaacaacaagaactccagctca
tctatcactgctactgatgtttccctttcagatccagatcttgctaaacaaatcctcaca
ttttcccagtcagaaagtattccaacactgtatcatgatggatacagcaagttgaggtca
tggacatatagctcactagatttatacaagcatgaattgcttcgtgttctctacccagta
tttatccactgtttcatggatttaatagcaaaaagccatcttcaagaagctcgagcattc
ttcaataactttcgtgaagatcatgagatgatgcattcacgagacctcacaaaattagaa
ggtgttctttccccatctcatttagaggaaatggagtttgctcacactctaaggcaaagc
aaagtgaatataaagatatgtcagtattcttatgatcttcttcttcaatatctacacaag
acacaatccattacaatgcttggtattatcaatgagcatattgatttccaagtttctcct
ggacaacctagctctatatctgatgatgctgaagccttttcacttgttgggagtggacaa
gatgctgctaatttaataaaccagaaagaaatacattgggggttgcttgaagattcttta
gaagatcggcttgataaagcaggtgggttgctctcagattcagaaaagacagaaggagaa
ggcaaagaaggagagttagatgaaaataagaaaaaatcaacagaaggtggaaagcaaggt
gggcccctcaagaagctaaagaaggataaagttgttggtggggcagggaaagctgcccga
ggggaaggtgaaaagtcaactgctgccccacgggtcaaacccgagcttactttgccaaca
atatcaacagatgtagaacattctattcttgaagaccttagaaaccgtgtacaattaaac
aattccacacttccttcagttagtttctacacattcattaatacacacaatggattaaat
tgttcatcaatatcccacgatggatcattagtagctggaggtttctcagattcatcactc
aaggtgtgggacatggcgaaacttgggcgtatggggagttctgttttgcagggtgaaaat
gatgaaaacacacatggatcaaataatggaaaaaggtcttacactttgtatcaggggcat
tctggtccagtttattcagcttcatttagtcctttcggggattttctcttatcatcatca
tcagattcaacaattcgattatggagcacaaagttgaatgcaaatgtcgtctgctacaaa
ggtcataattaccctgtatgggatgttcagtttagtccacttggacattattttgcaagt
gcatctcatgatagaacagctaggatttggtcaatggatagaatccagcctctaagaata
cttgcaggacacttatccgatgttgattgtgtacaatggcatatgaactgcaattacttg
gcaaccggatcaagtgacaaaacagttcgtttatgggatgtacaaagtggtgaatgcata
agaattttcattggtcataggagtatgattttatcattggccatgtcacccgatggtaga
tacatggcatctggtgatgaagatggaagtatcatgatgtgggatgtttccaatggtcga
tgtgtcactcctcttgtgggccatacttcatgtgtctggtctcttgcttttagttgtgag
ggatcgcttcttgcgtctggttcggctgattcaaccgtcaagttgtgggatgttaataca
agtgtgaaaccaccaaaaaccgaagacaataaaagtggaaatacaaatacaaatagactg
agatcactcaagactctaactaccaaatccaccccggtttatgctttaaggttttcgaga
aggaatcttctttttggtgctggggctctttcaacaaatgtgtaa
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