Lactuca sativa (garden lettuce): 111894135
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Entry
111894135 CDS
T05352
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111894135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111894135
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111894135
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111894135
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111894135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
111894135
NCBI-ProteinID:
XP_023745992
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Position
6:39509631..39513674
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AA seq
871 aa
AA seq
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MEMDNTSRGRSFDRSSRNPATLKKPRLVTEEPTILRSNNNPNGNNRPIVQRPSVGFRPAV
ERDGDSESYQPQSLSQIKQQQHQELVSQYRTALAELTFNSKPIITNLTIIAGENAQAAKA
IAATICNNIIEVPSDQKLPSLYLLDSIVKNIGRDYIRHFSTKLPEVFCKAYRQVDSALHS
GMRHLFGTWKGVFPPQSLQSIEKELGFSTVGNGNGNGNVSSSGLTTSRPESQPQRPARSI
HVNPKYLEARQKLQQSNRPKVAASDISTTRADPRLKLHQAQRDPESDLTNENYEFGSDIS
SPSEGSFGKSNGRVGEQGLEKTWYGSVSNTTDTISRLERNGHTLSSNYSLHKSSIPDVKS
QPINNLIKGSGEVSRSWKNSEEEEYLWDDVSSRTVNPILTSSNSSKRDPRLYFDPDRPGF
DNRLQKSQRMHEKESSPDLPSAEQRIPLPSTSLRAKGSFSTDENSFVGASRNLLHGSKVF
PSSSSGVSVSTSLDSLSRISLQSLKAARSQGQISQDSQKSKLQNLHPMKRTPFPPPHQEP
VSEPSVQFQPQPQPPKPLPVPRQQKPVVADIPGLSSTSSLLAAVSSIFGKKTTTQSMSSS
LKIPSSHESTSLSSSLLGTTPSTQSTTLPNPESNVSSLLSTLLSKGLISASEDNNNKNNN
INNNNNNNNKSDDVIATQTPKLTPKVSSKSVVINNKSVVGLEFKPDVIREFNPCVISELI
DDLPHQCGICGLRFKVQEPFDNHMEWHVLKNSESNTPNTKSSRRWFLKAENWVNGESDFD
FDPGSTTQETFLIDGEQMVTADETQIVCVLCGEIFDDFYNQERNKWMFKRAAYLNIGNGG
TRGVIVHENCVSVNSLSDLGLANDVKVEKSV
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacaacacttctcgcggcagatcattcgatagatcatcaagaaaccctgct
acactgaagaaacctcgattggtaacggaagagccaacgattcttcgcagtaataataat
cccaacggtaataatagacctatagttcaacggccgtcagtggggttccggccggcggtg
gagagagatggagactccgagtcgtatcagccacaatcgctatctcagataaaacagcaa
caacatcaagagcttgtgagtcagtataggacagctctagcggagctgactttcaattcc
aaaccaatcataacgaacttgactatcatcgccggagaaaacgcccaggctgccaaagct
attgctgctactatctgcaataacattatcgaggttccgagtgatcaaaagttgccatcg
ctatatcttctagacagtatcgtgaagaatattgggcgagattacatcagacacttttcc
accaaactccctgaggtattttgcaaggcatatagacaggttgattctgcattacattct
ggaatgcgacatctttttgggacatggaaaggagtatttccacctcaatcactccaatca
atagaaaaagaacttggtttttcaacagttgggaatgggaatgggaatggaaatgtttcc
tcttcagggttgaccacatctagacctgagtcacaaccacaacgccctgctcgcagtatt
catgtaaatcccaagtatttggaggcaagacaaaaactccaacagtcaaacaggccaaaa
gttgcagccagtgacatatccacaactcgtgctgatcctcgcctaaaattgcatcaggca
caaagagatccagagagtgatcttacaaacgagaattatgaatttggttctgatatatca
agcccttctgagggtagttttggaaaatccaatggaagagtaggagaacaaggacttgaa
aagacatggtatggatctgtgagcaatactacagatacaatatccaggcttgaaagaaat
ggacatacgttatcatcaaattattcactccataaatcttcaattcctgatgtgaaatca
caacccatcaacaatcttataaaaggaagtggtgaagtgagtaggagttggaagaattca
gaggaagaagagtatttgtgggatgatgtgagctcaagaacagtgaatcctattcttaca
tcttccaatagttcaaagagagatcctagactgtatttcgaccccgatagaccgggtttt
gataatcgtcttcagaaatcacaacggatgcatgagaaagaatcttcacctgatctacca
tctgcagaacagcggatacctttaccttctacttcactaagggcaaaagggtcattttcg
acagacgaaaattcctttgtaggtgcttctagaaacttattacatggttctaaagttttc
ccttcctcttcaagtggggtgtcagtgtcaacaagtcttgattctttatccagaatctct
ttgcaatctcttaaagcagctcgatctcaggggcaaataagtcaagattctcaaaaatca
aaacttcaaaatttacacccaatgaaacgcactccatttccgccacctcatcaagaaccc
gtatcagaaccttctgttcagtttcaaccacaaccacaaccccctaaacccttaccagtg
ccacgtcagcaaaaacctgtagttgcagatataccaggattatcatccacaagtagttta
ttagctgctgttagcagcatttttggcaaaaaaactactactcaatccatgtcatcatct
ctcaaaatcccatcctcccatgaaagcacatcactttcttcatctcttcttggtactact
ccatcaacacagagtacaactcttccaaatcctgaatcaaatgtctcaagtcttttgagt
acattgctctcaaagggtttaatctctgcatcagaagacaacaacaacaaaaacaacaat
attaataacaacaacaataataataacaaaagtgatgatgtcattgctactcaaactcca
aaacttactccaaaagtttcctcaaagagtgttgttattaataacaagagtgttgtagga
ttagagtttaagcctgatgtgattagggagtttaatccctgtgtgattagtgagctaatt
gatgatcttccacatcaatgtgggatttgtggattaagattcaaagttcaagaacctttc
gataatcatatggagtggcatgtgttaaaaaattcagaatccaacactccaaataccaaa
tcatcaaggagatggtttttgaaagctgaaaattgggtcaacggggagtctgattttgac
tttgaccctgggtcaactacacaagaaacattcttgattgatggtgaacagatggttact
gcagatgaaacccaaattgtgtgtgttttgtgtggagaaatttttgatgatttttataat
caagaaaggaataaatggatgtttaaaagagctgcttatttaaatattggcaatggtggg
acccggggtgtaattgtgcatgaaaattgtgtatcagtgaattcgctttctgatttgggg
ttagccaatgatgtgaaagtggaaaagagtgtatga
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