KEGG   Lactuca sativa (garden lettuce): 111894242
Entry
111894242         CDS       T05352                                 
Name
(RefSeq) UBP1-associated protein 2A
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111894242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111894242
   03041 Spliceosome [BR:lsv03041]
    111894242
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111894242
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111894242
Spliceosome [BR:lsv03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111894242
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Cut8
Other DBs
NCBI-GeneID: 111894242
NCBI-ProteinID: XP_023746085
LinkDB
Position
2:99302275..99305946
AA seq 483 aa
MAKKRKSRSSQSSQEEQVPVEDPTVSDAVVKEELEHGNEQPQNLDENKENDEQGEEDLQE
VEEVDVDEDEEEEEEEEEEEEEGEGDEQTTGNEVKEVKVETNGGGGQVIEDLSDEPVEKL
LEPFAKEQLVLLLKEAVSKYPDIVESVEKIADADPAHRKIFVHGLGWDTTTETLISEYKK
YGEIEDCKAVVDKVSGKSKGYGFILFKHRSGARKALKEPQKKIGNRITSCQLASAGPVPA
PPPTAPPVSEYTQRKIFVSNVSAEIDPQKLLEFFSKFGEIEDGPLGLDKQTGKPRGFALF
VYKSIESAKKALEEPHKNFEGHILNCQKAVDGVKMGKGFHPQQHQHHHQHHNQYGGHHHH
PSKKAKFSMGGGGAGAGQGHLMAPSAPTMGFTPPVPPPALTPALGQALTALLASQGAGLG
ITNLLGGLGTPANPQGMPHVNNSGYVNQGAASYQQQGGYPNPQMGQGGSRPQQGGASYMG
HGH
NT seq 1452 nt   +upstreamnt  +downstreamnt
atggccaagaagcgaaagtctcgttcttcacaatcttcacaagaagaacaagtgccggtt
gaggatccaaccgtcagtgatgctgttgtaaaggaggagctagagcatggaaacgaacaa
cctcaaaatttggacgagaataaagaaaacgatgaacaaggagaggaagatcttcaagaa
gtagaagaagtcgatgtcgatgaggatgaagaggaagaagaagaggaagaggaagaagaa
gaagaaggagaaggagatgaacaaacgacgggaaacgaggtgaaagaagttaaggttgaa
acgaacggcggaggcggacaggtaatagaagatttgtcggacgagcctgtcgagaagctt
ctcgagccgtttgccaaggaacaactcgttttactcttgaaggaggctgtttccaagtac
cctgacattgtcgaaagtgtcgagaagattgccgatgcagaccctgctcacaggaagata
ttcgttcatggtctaggatgggataccaccaccgaaaccctaattagcgagtacaagaag
tacggcgagatcgaggattgtaaggctgtggtagacaaggtctctggaaaatcaaaagga
tacggatttatcctcttcaagcacagaagtggtgctcgaaaagctttgaaagaacctcag
aagaagatagggaatcgcattacctcctgtcagcttgcttctgccggaccagtcccagcg
cctccaccaaccgcccctccagtgtctgaatacacacagaggaagatattcgtgagcaat
gtatcagctgagattgatcctcaaaaacttctagagttcttttcgaaatttggggagatt
gaagatgggccattgggattagacaagcagacgggaaagcctagaggttttgcactgttt
gtgtataagagcatcgaaagtgcaaaaaaagctcttgaagagccacacaagaactttgaa
ggacatattttgaattgccagaaggctgttgatggtgtgaaaatggggaaaggtttccat
ccacagcaacaccagcatcatcatcaacatcataatcagtatggtggtcatcatcatcat
ccttcaaaaaaggccaagttttccatgggaggaggtggtgcaggagcaggacaaggtcat
ttgatggctccttctgcacccactatggggttcactccaccagttcctcctcctgcattg
actcctgctttggggcaggcgttgactgcacttcttgcctctcagggagctggattggga
attactaatcttcttggaggacttggcacccctgcaaatccacagggtatgccacatgtc
aacaattctggatatgtgaatcagggagctgcaagctatcaacagcaaggtgggtatccc
aatccacagatgggtcaaggcggcagtaggccacaacaaggtggtgcatcttacatgggt
catggtcactag

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