Lactuca sativa (garden lettuce): 111894376
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Entry
111894376 CDS
T05352
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111894376
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsv01009
]
111894376
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111894376
03036 Chromosome and associated proteins [BR:
lsv03036
]
111894376
Protein phosphatases and associated proteins [BR:
lsv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
111894376
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
111894376
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
111894376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPP2R1A-like_HEAT
HEAT
HEAT_2
Htt_N-HEAT_1
Vac14_Fab1_bd
HEAT_EF3_N
PDS5
HEAT_EZ
CLASP_N
TAF6_C
Cnd1
TPR_TNPO3_IPO13_3rd
Motif
Other DBs
NCBI-GeneID:
111894376
NCBI-ProteinID:
XP_023746220
LinkDB
All DBs
Position
4:28942686..28946519
Genome browser
AA seq
587 aa
AA seq
DB search
MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGLEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET
DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASEMLKAELRSIYSQLCQDDMPMVR
RSASTNLGKFAATVEPSHLKTDVMQMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTKTDLVPAYVRLLRDNEAEVRIAA
AGKVTKFSRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPDWAMQHIVPQV
LEMVNNPHYLYRMTILSAVSLLAPVLGSQITSSKLLPVVVTLAKDRVANIRFNVAKVLQS
FIPILDQSVVEKSVRPCLVELSEDPDVDVRFFSKEALQAIDQVMMST
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggtagacgagcccttgtaccccatagcagtactaatagatgagctgaagaac
gatgatatccaattacgattaaattccatcagaaagctttctacaattgctcgtgctcta
ggagaagaacgaacccgaaaggaattaattcctttcttgagtgaaaacaatgatgatgac
gacgaggttcttcttgccatggctgaagagctaggtgtgttcattccttatgttggagga
cttgagcatgctcatgtgttgctaccccctttggaaactctttgcactgtcgaagaaaca
tgtgtgagagacaaagctgtggagtctctatgcaggattggatcccagatgagagaaaca
gatttggttgactggtttatacctcttgttaagaggttagcagctggtgagtggttcact
gctagagtttctgcatgtgggctgtttcacattgcttatccaagtgcctcagagatgttg
aaggcagaattgaggtcaatttatagtcagttatgtcaagatgatatgcctatggttagg
agatctgcctctacaaacttagggaaatttgctgctactgtggaaccttctcatctcaag
actgatgttatgcaaatgtttgaagatcttacacaggatgatcaagattctgtacgtttg
cttgctgtggagggttgtgctgctcttgggaagctgttggaacctcaagactgtgttgca
catattcttcctgtcattgtcaatttttctcaggacaagtcatggcgtgttcgatacatg
gttgctaatcagctgtatgagctatgtgaagctgtgggacctgaacctaccaaaacggat
ttagttccagcatatgttcggctacttagagacaatgaagcagaagtacgtattgcagct
gctggaaaagtcaccaaattctcccgcattcttagtccagagcttgctattcagcatatt
cttccatgtgtcaaggagttgtcttcagattcttctcagcatgttagatctgctttggct
tctgttataatggggatggctcctgttttagggaaggatgcaactatcgagcaacttctc
cctatctttctatcacttttaaaagacgagtttccagatgtacgtctgaatattattagt
aagctagatcaagtgaatcaggtgattgggatcgatcttttatcccaatcattacttcca
gcaattgtggaacttgctgaagacagacattggagggtgcgattggctataatagaatac
atacctctgttagcaagtcagttgggtgttgggttttttgatgataaacttggtgccctt
tgcatgcaatggttacaagacaaggtatattcgatcagagaagctgctgctaacaatttg
aagagacttgcggaggagtttggtccggattgggcgatgcagcacattgtcccgcaggtc
ttggaaatggtcaacaacccgcattacttgtaccgcatgaccattcttagcgccgtttct
ttacttgctcctgttctcggctctcagattacctcttccaagttgctacccgttgtcgtt
actctcgccaaagacagagtggcaaatatcaggtttaatgttgcaaaggtcttgcagtct
tttatccctattcttgaccaatctgtggtggagaaaagtgtaaggccatgtttagttgag
ttgtcggaggacccggatgttgatgtgcggttcttttcaaaagaagcacttcaggctatt
gatcaagtcatgatgtcaacctaa
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