Lactuca sativa (garden lettuce): 111894648
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Entry
111894648 CDS
T05352
Symbol
LOC111894648
Name
(RefSeq) RIC1-like guanyl-nucleotide exchange factor
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111894648 (LOC111894648)
Membrane trafficking [BR:
lsv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
111894648 (LOC111894648)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Nbas_N
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR5
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
111894648
NCBI-ProteinID:
XP_023746511
LinkDB
All DBs
Position
7:complement(4705304..4713278)
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AA seq
1100 aa
AA seq
DB search
MYMAYGWPQVIPLESGLCPTSQQIIYLKVVDRLLLVVCPSHFELWSSSQHRVRLGKYKRD
PDSIAREGENVQAIWSPDTKLIAVLTSSFYLHIYKVQFMEKKIHIGGKQPSSLSLANISL
LMNEEVPFSEKDLMMSNIICDSKNLLVGLSNGSLYNMSWKGEFYGALDLDFHLNTGNGHT
KLSNGVVSSSHSLSRKSAITYLEFSLPLRLLFVLFSDGQLVLCSISKRGLKQADSVKPEY
RLGSGDAVCASISPDQQILAVGTRRGVIELYEISEPISLIRSVSLHDWGYSMDDTGAVSS
ISWTPDSSAFAVGWKLRGLTVWSISGCRLMSTIRQIGLNSVSSPGVKQNPDGNYEPLMSG
TSFMQWDEYGYRLYAVEEGSSERILAFSFGKCCLNRGVSGKTHVRQVIYGEDRLLVVQDT
DELKLMHLNLPVSYISQNWPVLHVAASEDGMYLAVAGLHGLILYDIRLNRWRFFGDVTQE
QKIQCTGLLWMGKIVVVCNYIEQSDMYELLFYPRYHLDQSSLLYQKPLLAKPLVMDVYND
YLLVTYHPFDVHIFHVKLSGDLTPSSTPILQLSTVRELSIMTAKCHPAAMRFIPDQPDTD
ASIKDASSSSEKEPIRCLILRANGELSLLDLIDGREMELTESIELFWVTCGRSVDKTNLI
EEVSWLDYGHRGMQVWYPSSGVDPYKQEEFLQLDPELEFDREVYPLGLLPNAGIVVGITQ
RLSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKSEEALQLARLSEEKPHFSHCLEWLL
FTVFEAEISSQNANRNQSPSLLEKTCDLIKKFPEYFDVVVSVARKTDGRHWADLFSAAGR
STELFEECFQRRWYQTAACYILVIAKLEGAPVSQYCALRLLQATLDESLYELAGELVRFL
LRSGREYEPTTPTDSDKLSPRFLGLFLFPSSYRKQSTEARSPSFKEQNAHVASVKNILES
HASYLMSGKELSKLVAFVKGTQFDLVEYLQREKYGSARLENFASGLELISRKLQMGTLQS
RLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLIDLFRHDMRLWKAYSATLESHPSFSEY
HDLLGSLGEKLSSNEITEET
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcgtacggatggcctcaggtgatccctctggaatcagggctatgtccaact
tcgcagcagatcatataccttaaagttgttgatcgtttattgctagttgtttgcccttct
cattttgagctgtggagctcttcgcagcatagggtgagattagggaagtacaagcgagat
ccggattcaatagcaagagagggggaaaatgtgcaggctatctggagccctgataccaaa
ttaattgctgttcttacatcttcattttatcttcacatatataaagtccagtttatggag
aaaaaaatacacataggaggaaaacaaccatccagtctatctcttgcgaatatttctcta
cttatgaatgaggaagtccccttttcagaaaaggacctgatgatgagcaatatcatttgt
gacagcaaaaacttgttggttggactttcaaatggaagtttgtataatatgtcttggaag
ggtgagttttatggagccttggatcttgacttccatttgaacactggaaatggccataca
aaattgtctaatggtgttgtatcatccagtcattctctgtctagaaaatcagccatcact
tatttggagttttcattgccactaaggctgttatttgttctattctctgatggacaattg
gtgctatgttccataagtaaaagaggtctgaagcaagctgactcggtcaaacccgagtat
cggttaggctctggcgatgcagtatgtgcttccatttcgccagatcagcaaatccttgct
gttggcaccagaagaggtgtcatagagttgtatgaaattagcgaacccatttcacttatt
cgttctgtctccttacatgattggggatattcaatggatgataccggtgcggttagttct
atttcatggacacctgatagttctgcttttgcagttggatggaaattaagaggacttaca
gtttggtctatttctggttgtcgtttgatgtctacaatccgtcaaattggtttaaattcc
gtgtcatctccaggggtaaagcaaaacccagatggaaattatgaacctttaatgagtggg
acctcatttatgcagtgggatgaatatgggtatagactttatgctgttgaagaaggttct
tcagagagaatacttgcgttttcttttgggaaatgttgccttaacagaggggtttcgggt
aaaacccatgttagacaagttatctatggtgaagatcggttacttgttgtccaagataca
gatgaactcaagttaatgcatcttaatcttccagtttcttatatttcacaaaattggcct
gttcttcatgtggcagccagtgaggatgggatgtatttggcagttgctggtcttcatggg
ttgattttatatgacattcgattaaatagatggagattttttggggatgtgactcaagaa
caaaagattcaatgtacaggcttgttatggatggggaagattgttgttgtttgcaactac
atcgagcaatcagacatgtatgagttgctattctacccaagatatcatcttgatcagagc
tcacttctttatcaaaaaccattgcttgcaaaacccttggtgatggatgtctataatgac
tatttacttgtgacttaccacccatttgatgtccatatattccatgtgaagttatctggt
gacttgactccttccagtacccctattttacagctttctacagtacgagagttatccatc
atgactgcgaagtgccaccctgctgcaatgcgttttatacccgatcaaccagatactgat
gcctccattaaagacgcttcatcatcatcagaaaaagaacccattagatgtttgatacta
agggcgaatggggaactgtcattacttgatctaattgatggtcgtgaaatggagcttaca
gagtctatagaactgttttgggttacatgtggaagatcagtggataaaacaaatttgatt
gaagaagtttcatggttagactatggccatcgtggaatgcaggtttggtatccatcttca
ggtgtggacccctataaacaggaagaattcttacagctggatcctgagcttgaatttgat
cgtgaagtgtatccacttggtttgcttccaaatgcgggaattgtagttggaattacccag
agactatcgttttcagcatgcactgagtttccatgttttgagccatctcctcaagcacaa
actatactacattgcctgcttcgccaccttcttcagagagataaaagtgaagaagcttta
caactggctcgattatcagaggagaagcctcatttttcacattgcttagagtggcttctt
tttactgtttttgaagctgaaatttccagccaaaatgcaaacagaaatcaaagcccttct
cttttggagaaaacttgtgatttaataaagaaatttccagaatattttgatgttgttgtt
agtgtggcaagaaagactgatggtcgacattgggcagacttgttttctgctgctggtaga
tcaaccgagttgtttgaagaatgtttccaaaggagatggtatcaaacggcagcttgctat
atacttgttattgcaaagctcgaaggagcacctgtgagtcaatactgtgctctacggttg
ttacaggcaacactggatgaatctttatacgaacttgctggggagttggtgagatttctg
ttgagatctggaagggaatatgaacctacaacaccaacagattcggataaattatctcca
agatttcttggattatttctttttccttctagttataggaaacagtctacagaggcaaga
agcccttcattcaaagagcagaatgcacatgttgcttctgtcaagaatatcctagaaagt
catgctagctacttgatgtctgggaaagaactctccaagcttgttgcttttgtgaaaggc
acccagtttgatctagtggaatatttacaacgggaaaaatatggaagtgctcgtttggag
aattttgcttctggacttgaattgataagccggaagcttcaaatgggaaccttgcaaagt
cggttggatgcagaattcctgttgtctcatatgtgctcagtcaaatttaaagagtggatt
gtagttttggcgactcttttaaggcgatctgaggttctcattgatttatttcgccatgat
atgcgactctggaaagcatatagtgcaacactggagtcgcatccatcgttttctgaatac
catgatttgctgggaagcttgggagagaaactttcatccaatgaaattacagaagagacc
tga
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