Lactuca sativa (garden lettuce): 111894739
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Entry
111894739 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111894739 isoform X1
KO
K06100
symplekin
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111894739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111894739
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111894739
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111894739
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111894739
U7-dependent histone pre-mRNA processing factors
111894739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
111894739
NCBI-ProteinID:
XP_023746606
LinkDB
All DBs
Position
1:complement(1602683..1613875)
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AA seq
1266 aa
AA seq
DB search
MAASQREQALSLLAAANNHGDLAVKLSSLKQAKDILLSADLSLLSDELFPYLVELQSCHE
ALVRKTLVEVVEEISLKAMEYSQLLMQVLLTLLTDPDSVVARQAIVAGTHIFCEVLDALA
FQFHRHGIVERWLEEIWSWMIKFKDSVFQVALEARSVGPRLLAIKFLETCVLLFMPDNDS
RGHATEAVARSAQMFNISWLSGGHPVLDSIALQSEANRSLFILFDLLRSPSLLPGSITIS
IINSLAIIARRRPVHYSSVVSALVDFDGNFIAKGAHNASIQYSLRTAYLGFLRCTHPVIM
ESRDKLLKILRAMNAGDAADQVMRQVDKMLRNSARDARANKDEQQPSSHMLMSGGDMARK
RSTPMDQEHSDSSSKRSRYACSNGSDDHSVNGVSAKMPPLDNGLSPVEQMIAMIGALLAE
GERGAESLEILISQIHPDLLADIVVTNMKHLPKSPPPLTRLSSQLVPRPSAAPLSPTPTS
NTLLQSDPKRDSRRDPRRHDPRRVVGTPSDHIVEDAAQSGLPESDFDASLLFRQPQPTPP
VEDKSEILIPKIETKFHTPENQSSFKEQVPNEQVGPDVKLNIVSDVAISSVDSHEQKSTD
IITMTDEGHLPSSSFMDDDQLSPPGRVETPVMEETSVDLPAVPSYVELTEEQQRDARKMA
IKRIIDSYKQLRGAEFMQTRMALLSRLVAQVDADDDVILMMQKHIVSDYQHQKGHELVMH
VLYHLHAVRVSDSAQDSSGAVVYDKFLLGVAKCLLDALPASDKSLSRLFSEAPFLPESAF
ELLDEICCSDNNCGKDIRDGDRVTQGLGSLWSLILGRPHERQAFLDIALKCAVHPKDDIR
AKAIRLVANKLYVISFISEKIEDFATNKLLSAVNRPVSGAGAELSVCGANEQRPEGQFQM
GNQETSVSGSQISEPGTSESESMSPAQAQQHLSLFFALCTKKPSLLQLVFDKYDHAPKAV
KQAVHRHVPILIRALGPSYSDLLSIISDPPQGSENLLTQVLHVLCEGTTPSADLIETVKR
LYKTKLKDAAILIPILSSFTKNEVLPVFPRLVQLPLDKFQTALAHILQGSAHMGPALTPA
EVLVAIHDISPEKDGVPLKKIMDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRT
VIQAMDAFPKLVDFVMELLSKLVSKQVWRMPKLWVGFLKCISQTQPHSFRVLLQLPSPQL
EGALNKYGSLRGPLAAYASQPNIKSSLPRSTLQALGLGLETESLASSFNNPADKSAKGPN
VTIIHT
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcacagcgagagcaagcgctctctctcctggccgctgcaaataaccacgga
gatttggcggtgaaactttcgtctttgaagcaagccaaagatattttattatccgcggat
ctttcgttgctttccgacgaactatttccgtatttggttgagctccagtcttgtcatgaa
gcccttgtccgaaaaacccttgtcgaggtggttgaggagatcagtttaaaagcaatggag
tattcacagctactgatgcaagtcttgttgacactactaactgatcctgattctgttgtt
gctagacaagccattgttgctggcacacatatcttctgtgaagtgttggatgcgttagct
tttcagtttcaccggcatggtatagtggaaagatggcttgaagagatctggtcatggatg
atcaagtttaaggattctgtcttccaagttgcattggaggctaggtctgttggtccaagg
ctgcttgctataaagtttttggaaacttgtgtattgctgttcatgcctgacaatgattct
agagggcatgctacagaagcagttgctagaagtgcacagatgttcaatatttcatggttg
tctggtggtcaccctgttctggattcaattgcactccagtcagaagcaaatagatccttg
ttcattttatttgatttgttgaggtcgcctagtcttctccccggttccattacaatttct
attattaatagtcttgctatcatagctcggaggaggccggttcactatagctctgttgtt
tctgcactcgttgattttgatggtaatttcatagcaaaaggagcccataatgccagcata
cagtattctttacgaactgcttacttgggattcttgaggtgcacacaccctgttatcatg
gagtcgagagacaagttgctcaagattttgcgggcaatgaatgctggtgatgcggctgac
caggtgatgcgtcaggttgataaaatgctcagaaatagcgcccgtgatgctcgggcaaac
aaggatgagcaacaaccatcaagccatatgcttatgtcaggtggtgacatggcaaggaaa
cggtcaactcctatggatcaagaacatagtgattcatcttcaaaaaggagtcgttatgct
tgttctaatggtagtgatgaccactcagtaaatggtgtatcagccaagatgccaccatta
gataacggtctcagccctgttgaacaaatgattgccatgattggtgctttactagctgaa
ggagaaagaggtgctgaatctcttgaaatccttatatcccagatacatcctgatcttcta
gcagacattgttgttacaaacatgaaacatttaccaaaaagccctcccccattaaccaga
cttagcagccagctagtaccccgccctagtgccgccccgttgtctcctacacccacttcc
aatactcttctgcaatcagatcctaaacgtgattcacgaagggatcctcgtcgccatgac
ccaaggcgtgttgttggaaccccatcagatcatattgtggaagatgctgcacaatctggt
ctaccagagtctgattttgatgcctctcttctgtttagacaaccacaacctactccacct
gttgaagataaatcagaaattcttatacccaaaatagaaaccaagtttcataccccagaa
aatcaatcatcttttaaggaacaggttcccaatgaacaagttggtcctgatgtgaaattg
aatattgtttcagatgtagcaatttcttctgttgactcacatgaacaaaagtcaacggat
attattacaatgacagatgaaggccacctgccatcatcttcattcatggatgatgatcag
ctctcaccaccaggcagagtggagacacctgtcatggaggaaacatctgttgatttacct
gcggttccatcttatgtggaattgactgaagaacagcaaagagatgcaaggaaaatggca
atcaaaaggattatagactcttataagcagttaagaggagcagagtttatgcagacacgc
atggcattgctttctcgactggttgctcaggttgatgctgatgatgatgtaattttaatg
atgcaaaagcatattgtctcagactaccagcatcagaaggggcatgagcttgtaatgcat
gtgctataccacctccatgctgtcagggtgtcagattcagcccaagactcttcaggggcc
gttgtatatgacaagttccttctgggagtggctaaatgtctgctggatgccttaccagca
agtgataagtcgttgagcagactttttagtgaagctccttttttgcctgagtctgcattt
gagcttcttgatgagatatgctgctcagataataactgtggaaaagatattcgtgatggt
gatcgtgtcactcaaggtcttggttctttatggagcttgattttagggcgtcctcacgag
cgtcaggcctttttggatattgccttgaagtgtgctgttcatcctaaagatgacatccgt
gcaaaagctatacgactggtggcaaacaaactttatgtaattagtttcatctcggagaaa
attgaggattttgccacaaacaaattgctctcggctgttaacagaccagtatcaggtgct
ggtgctgagctgtcagtttgtggggccaatgaacaaagacctgaagggcagtttcagatg
ggaaatcaagaaacatcagttagtgggtctcaaatttcagagccaggaacttctgaaagc
gagtcaatgtcgcctgcacaagctcaacaacacctttctctgttttttgctttatgcacc
aagaaacctagtcttcttcaacttgtatttgacaaatatgatcatgctcctaaggcagtt
aagcaggctgttcatcgtcatgttcctatacttatccgggctttaggcccatcatattct
gatttactctcaataatatctgatccacctcaaggaagtgaaaacctcctgacacaggtg
cttcatgttctatgtgaagggacgactccttcggccgatttaattgaaactgtcaagcgt
ttatacaaaactaaacttaaggatgctgcaatacttattccaatattgtcttcatttacc
aagaatgaggttttgcctgttttcccacgactcgttcagcttccattggacaagtttcag
acagcactggcccacatactgcagggttcagctcatatggggcccgcactgacaccagca
gaagtattggtggcaatccatgacattagccctgagaaggatggtgttccactaaaaaag
ataatggatgcttgttcagcttgttttgagcagcgtactgttttcacacagcaagtccta
gcaaaagcattgaaccaaatggttgatcaaacacctttacctcttctgttcatgaggaca
gtaatccaggccatggatgcttttcccaaattggttgactttgttatggagctactttcc
aaactcgtaagtaaacaggtatggaggatgccgaaattgtgggtcggatttctgaaatgc
atttcacaaacacagccacattcttttcgtgtattattacaattgccttcaccacagctt
gagggtgctctgaacaagtatggtagcctacgaggtccccttgctgcatatgccagtcaa
cctaatatcaaatcctccttgcctaggtcaactctacaagctcttggtcttggtcttgaa
actgaaagtcttgcttcttctttcaacaacccagcagacaaaagtgcaaaagggcccaac
gtcacaatcatacatacttga
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