KEGG   Lactuca sativa (garden lettuce): 111894942
Entry
111894942         CDS       T05352                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111894942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111894942
Spliceosome [BR:lsv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    111894942
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    111894942
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 111894942
NCBI-ProteinID: XP_023746791
LinkDB
Position
7:130530457..130532652
AA seq 376 aa
MANRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
HGGNRKPTPFICLVMKMLQIQPDKEIVVEFIKNEDYKYVRILGAFYLRLTGTDIDVYRYL
EPLYNDYRKLRRKLGDGKYSLTHVDEVIDELLTKDYSCDIALPRIKKRLTIEAIGALEPR
KSALEDDFEEEEEKDEDEQPMDTDVGGHEKDYYRGQSPTKERERDRKRDSHRHRDRDVDR
EYERDYDYERERGRGRDRDRDRDRYRGRDERDYGRERRGGRRRSRSRSRSRSKDRKERGR
DDGEERRRRHGRDRDRDRDRDSSGSPRRMQDDVKPAKKKKEKEKEKKKDDGTDHPDPEIA
EANRIRASLGLKPLRP
NT seq 1131 nt   +upstreamnt  +downstreamnt
atggcgaatcgtacggacccatctgcgaaaagcatacatggaacgaacccccaaaacctc
gttgagaagatattgagatccaaaatttaccaaaacacatattggaaggagcagtgtttc
ggtttgacagctgagacgcttgtggacaaggccatggagttggatcacctcggcggcacc
cacggcggaaatcgcaaaccgacgccgttcatctgcctcgtcatgaagatgctccagatc
cagcctgataaagaaatcgtcgtcgaattcatcaaaaacgaagattacaaatatgtacga
atccttggagccttttacttgcgacttacaggcacagatattgatgtctaccggtatcta
gagcctttgtacaatgattacaggaaactgagacgcaaattaggcgatggaaaatattcc
ttgacacatgtggatgaggttattgatgaactcttgacaaaagattattcctgtgatatt
gctcttccacgcataaagaaaaggcttaccattgaagcaattggcgctttagaacctaga
aaaagtgcacttgaagatgattttgaggaagaagaggaaaaagatgaggatgagcaaccc
atggatacagatgttgggggtcacgaaaaggattattatcgcggacaaagcccaacaaag
gaaagagagcgagataggaaacgtgacagccatagacatagggaccgagatgttgataga
gagtatgagagagattatgattatgagcgagagcgtggaagagggcgtgatagggacaga
gacagggaccgttatcgtgggagagatgaaagggattacgggagggagagacgtggcggc
aggaggaggagccgctcccggagtagaagccggagcaaggacagaaaggaacggggtcgg
gatgatggggaggagaggcggaggagacatgggcgggatagggatagagatagggacagg
gacagcagtggtagccctagaaggatgcaagatgatgtgaaaccagccaagaagaagaaa
gagaaggagaaggagaagaagaaagatgatggaacggatcatccggatcctgagattgca
gaagctaataggattcgggcttcacttggtttgaagcctctcaggccatga

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