Lactuca sativa (garden lettuce): 111894942
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Entry
111894942 CDS
T05352
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111894942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111894942
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111894942
Complex C
U4/U6.U5 tri-SnRNP related factors
111894942
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
111894942
NCBI-ProteinID:
XP_023746791
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All DBs
Position
7:130530457..130532652
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AA seq
376 aa
AA seq
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MANRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
HGGNRKPTPFICLVMKMLQIQPDKEIVVEFIKNEDYKYVRILGAFYLRLTGTDIDVYRYL
EPLYNDYRKLRRKLGDGKYSLTHVDEVIDELLTKDYSCDIALPRIKKRLTIEAIGALEPR
KSALEDDFEEEEEKDEDEQPMDTDVGGHEKDYYRGQSPTKERERDRKRDSHRHRDRDVDR
EYERDYDYERERGRGRDRDRDRDRYRGRDERDYGRERRGGRRRSRSRSRSRSKDRKERGR
DDGEERRRRHGRDRDRDRDRDSSGSPRRMQDDVKPAKKKKEKEKEKKKDDGTDHPDPEIA
EANRIRASLGLKPLRP
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgtacggacccatctgcgaaaagcatacatggaacgaacccccaaaacctc
gttgagaagatattgagatccaaaatttaccaaaacacatattggaaggagcagtgtttc
ggtttgacagctgagacgcttgtggacaaggccatggagttggatcacctcggcggcacc
cacggcggaaatcgcaaaccgacgccgttcatctgcctcgtcatgaagatgctccagatc
cagcctgataaagaaatcgtcgtcgaattcatcaaaaacgaagattacaaatatgtacga
atccttggagccttttacttgcgacttacaggcacagatattgatgtctaccggtatcta
gagcctttgtacaatgattacaggaaactgagacgcaaattaggcgatggaaaatattcc
ttgacacatgtggatgaggttattgatgaactcttgacaaaagattattcctgtgatatt
gctcttccacgcataaagaaaaggcttaccattgaagcaattggcgctttagaacctaga
aaaagtgcacttgaagatgattttgaggaagaagaggaaaaagatgaggatgagcaaccc
atggatacagatgttgggggtcacgaaaaggattattatcgcggacaaagcccaacaaag
gaaagagagcgagataggaaacgtgacagccatagacatagggaccgagatgttgataga
gagtatgagagagattatgattatgagcgagagcgtggaagagggcgtgatagggacaga
gacagggaccgttatcgtgggagagatgaaagggattacgggagggagagacgtggcggc
aggaggaggagccgctcccggagtagaagccggagcaaggacagaaaggaacggggtcgg
gatgatggggaggagaggcggaggagacatgggcgggatagggatagagatagggacagg
gacagcagtggtagccctagaaggatgcaagatgatgtgaaaccagccaagaagaagaaa
gagaaggagaaggagaagaagaaagatgatggaacggatcatccggatcctgagattgca
gaagctaataggattcgggcttcacttggtttgaagcctctcaggccatga
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