KEGG   Lactuca sativa (garden lettuce): 111895075
Entry
111895075         CDS       T05352                                 
Name
(RefSeq) THO complex subunit 7B
  KO
K13176  THO complex subunit 7
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03013  Nucleocytoplasmic transport
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111895075
  09122 Translation
   03013 Nucleocytoplasmic transport
    111895075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111895075
   03041 Spliceosome [BR:lsv03041]
    111895075
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111895075
Spliceosome [BR:lsv03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111895075
SSDB
Motif
Pfam: THOC7 DUF4844 Ltn1_1st ATG14 DUF3450 DUF2570
Other DBs
NCBI-GeneID: 111895075
NCBI-ProteinID: XP_023746960
LinkDB
Position
1:complement(133578174..133579486)
AA seq 248 aa
MLKSRKVSGRGEATGGAAHYAFGALDDDIIIKHRLLTRTTTTRGEPPLKKLQKKFTSFAL
ETEKDSENYAECERLAKAFLQELKTFELPLVKTKAVIDANVREKENFNELNDKINRKIVE
AHDDIEDLKKQLEESKVERKHKEECETIRKLIAAQPPRSQTQKLINDLEKEIASLEAENT
ASSRTLELRKKQFALLLHVVDELQNTIEEEQKSMMEEMRMAIYENKNIVEDATVSVTGGS
SETPMAID
NT seq 747 nt   +upstreamnt  +downstreamnt
atgttgaaatccaggaaagttagtggtagaggagaagcaaccggaggagctgcacattac
gcatttggagccctagacgatgatataatcatcaaacacaggcttctcaccagaacaaca
accacaagaggtgaacctccattgaaaaagcttcagaaaaaattcacctcttttgctctg
gaaaccgagaaagactcagagaattatgccgagtgtgagaggcttgcgaaggcattctta
caggagctcaagactttcgagctcccattggtgaaaacaaaagcggttattgatgcaaat
gttagagagaaggagaatttcaatgagttgaatgataagatcaatcggaagatagtggaa
gcacatgacgatattgaggatttgaagaagcaacttgaggagagtaaggttgagcggaag
cataaggaggagtgtgagacaattaggaagctgattgctgcacaacctccaagatctcag
acccagaagctgattaatgatctggagaaagagattgcatctttggaagctgaaaatact
gcaagttcaaggacattagagcttcggaagaaacaatttgctcttctgttacatgtggtg
gatgagttgcagaatacaattgaagaagaacaaaagagtatgatggaggaaatgagaatg
gcaatttatgaaaacaagaacattgttgaggatgctactgtgtctgttactggtggaagt
tcagaaactcctatggccattgattaa

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