Lactuca sativa (garden lettuce): 111895403
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Entry
111895403 CDS
T05352
Name
(RefSeq) nuclear pore complex protein NUP98B
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111895403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111895403
03036 Chromosome and associated proteins [BR:
lsv03036
]
111895403
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111895403
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111895403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
111895403
NCBI-ProteinID:
XP_023747249
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Position
9:146683906..146687884
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AA seq
740 aa
AA seq
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MEATRSLTPKYHVYKHSCYLSTSFEKSRTSKRYLIQLRFDSEHDSNMFTSPAYSHSSSGT
FGFPLVFGEGNQKVDATGMSNYGGTSTWTYAQTSSPSSSTTIFGASSPYGFGSSSSSGAN
ATRSTFDLQKSPFGGQDRGSRIANYKTTLETEYNPEKLVSISAMPVYKAKSHEELRWEDY
KFTEKGGFGPSSTAIKSTSSTLSPFTSSSFTNFSTNSWGTTSVSSTPITPNPFSKRSNSV
ATETPTWSWKFPGPTSTPQPLHFLSSTNNSLSSFTSSPLNSFNPFLSKTNLTSPASFTST
FAPLNQNPFTSLPTQMSSSSFSSPTFAPFIKPSSSSGFFPTPIVTSPANSMSSGLCSTFN
QPTTLFPSSSSTSVSWSHEPLNQNLLKNPFTSQPTQTCSTSAAFTHGVVTMVTTPATSVS
VSPFNQPTTFFKPCAPSTQNYNGENTTGIISQITSKNQNPFGTLPPISHLSFECSQSIQY
GISSIPVKDKSAMVKYPLLTPRHLYRRNKLPVQKYDPKLNSLKMPFFSDTKEIPVAAFFP
RENPRELVIKGNMHKQKLSDNTYENEKDDIKVYDSSNDQTKEKKKFPSVLDVPLKLQLPD
YYTKPEISELESKERAEPGFCSHVNDFVIGRHGYGSIKFLGETDVRRLDLESFVQFNNRE
VIVYMDDTKKPPIGQGLNKPAEITLLNIKCIDKRSGVEYKDGLKIDKYIEMLKKKVVAQG
GEFISYDPVEGEWKFRVQHF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggaagctactcggtcactgacgccaaaatatcatgtatataaacactcatgctattta
tcaacatcatttgaaaaatcccgaacatcaaaaaggtatttgattcaattgcgattcgat
tcggaacacgattcaaatatgtttacatcacctgcttattcgcattccagcagtggtact
tttgggtttccattagtttttggagaaggcaatcagaaggtagatgcaacaggaatgtca
aattatgggggaacctcaacctggacatatgctcaaacctcatccccttcatcttccaca
acaatatttggagcttcatcaccatacggttttggaagttcatcttccagtggagctaat
gccacaagatcaacttttgatcttcaaaagtcaccttttggtggccaagatagagggagc
agaattgcaaattacaaaacaacccttgagactgagtataatccagagaaacttgtatca
atttctgccatgcctgtttacaaagctaaaagccatgaagaactaaggtgggaagattac
aagttcaccgaaaaaggtggatttggtccaagttctacagcaataaagtcaacatcatcc
actctatctccttttacctcatcatcatttactaatttttctacaaattcatggggcacc
acttcagtttcttcaacaccaattacaccgaacccattttcaaaaagaagcaattcggta
gccacagagacgcccacatggagctggaagtttccgggacccacatccactccacagcct
cttcactttttatcttctacaaacaattctttgagcagttttacttcttctcctttaaac
tcattcaacccatttctttccaaaacaaacctcacatctccagcctcctttacatccaca
tttgcacctttgaatcaaaatcctttcacttcactacccactcaaatgtcttcctccagt
ttttcaagtcctacatttgcaccatttatcaaaccatcttcttcaagtggtttctttcca
actccaatagtgacttcacctgctaactctatgagctctggtttgtgttcaacttttaat
caaccaacaacattgtttccatcatcttcaagcacctcagtatcatggtcacatgaacct
ttgaatcaaaatctcttgaaaaaccctttcacctcacaacccactcagacctgttctaca
tctgcagctttcactcatggtgtagttaccatggtgactacacctgctacctctgtttca
gtttcacctttcaatcaaccaacaacattctttaagccttgtgctccttcaactcagaac
tataatggggaaaatacaacaggaattattagccaaattactagcaaaaaccaaaatcca
tttggaacacttcctccaatatctcacttgtcttttgaatgttctcaatcgattcagtat
gggatatccagcatacctgtcaaagacaaatctgccatggtcaaatatcccttgttgact
ccaaggcatttgtacagaagaaacaagctaccagttcagaagtatgacccaaaactaaat
agtttaaagatgccattttttagtgacaccaaggagataccagttgctgcattcttccca
agggaaaatccaagggagttggttatcaaagggaacatgcataaacaaaagttgtcagat
aacacgtatgaaaatgagaaagatgatatcaaggtttatgattcttcaaatgatcaaacc
aaagagaaaaaaaagttcccatcagtccttgatgtcccattaaaacttcaactccctgac
tactacacaaaacctgaaatttcagagttggaatcaaaagaaagggctgagccagggttt
tgcagccatgttaatgactttgtaattgggcgccatggctatgggagtattaagttctta
ggggagactgatgtgagaagactcgatcttgaaagttttgtccaatttaataaccgagag
gttattgtgtatatggatgacaccaagaaacctcccattggccaagggctcaataaacca
gctgagataacacttcttaacatcaaatgtattgataaaagaagtggagtggagtacaag
gatggtttgaagattgataaatacatagagatgttgaagaagaaggtggtggcacaaggt
ggtgagtttatttcatatgatccggttgaaggtgaatggaaatttagagtccaacacttc
tga
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