KEGG   Lactuca sativa (garden lettuce): 111895435
Entry
111895435         CDS       T05352                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03020  RNA polymerase
lsv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111895435
  09124 Replication and repair
   03420 Nucleotide excision repair
    111895435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    111895435
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111895435
Transcription machinery [BR:lsv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111895435
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111895435
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 111895435
NCBI-ProteinID: XP_023747280
LinkDB
Position
1:247667128..247669365
AA seq 214 aa
MSEKGEKGGKSALKSPASKGKDKGRKVQFDSEDMFDEKFETNGNGKSNGKADGYSGKGKG
GKGDKGGSGKKEPRALLLNVEQEIPENVTCLMDCEAAQIMQGIQEHMVLLSKDPSIKIPI
SFDRALQYASRGNHYTDPHSVRKVLEPLKNQGVSDAEMCLIANTAVESVGEAFGLMPSLK
AKKSKVKEPLKSALTELEKLKIVMESTKKAIVLD
NT seq 645 nt   +upstreamnt  +downstreamnt
atgtctgagaaaggagaaaagggaggaaaatctgctttaaaatcaccagcttctaaagga
aaggacaagggaagaaaagttcagtttgattccgaagacatgttcgatgaaaaatttgag
acaaatggaaatggcaagtctaatgggaaggctgatggctattctggtaaaggcaaaggg
ggaaaaggagataagggaggctctggaaaaaaagaacctcgtgcacttttgcttaatgtt
gaacaggagattcctgagaatgtgacatgtttgatggattgtgaagctgcacaaattatg
caaggaattcaagagcacatggtgttattgtcaaaagatccatcgattaaaatcccaatt
tcatttgatagggcattgcagtatgcatccagaggcaatcattacactgatcctcactct
gttagaaaagtattggaacctctcaagaaccaaggtgtttctgatgccgagatgtgcctc
attgcaaacactgcagttgaatctgttggcgaagcttttggtctcatgccatcattaaag
gcgaaaaaaagcaaagtcaaggagccattgaaaagtgcgttgactgagctggaaaagctc
aaaattgtgatggaaagcaccaaaaaggctatagtccttgattga

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