Lactuca sativa (garden lettuce): 111895450
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Entry
111895450 CDS
T05352
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111895450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111895450
Membrane trafficking [BR:
lsv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111895450
Hops complex
111895450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
zf-RING_6
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
111895450
NCBI-ProteinID:
XP_023747295
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All DBs
Position
9:complement(171540617..171544410)
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AA seq
943 aa
AA seq
DB search
MYQWRKFEFFEEKYAGKCLVPDEVAGKIECCSSGRGKIAVGCEDGTVSLLDRGFKFSYGF
QAHTSSVLFIQQLKQRNFLLTVGEDEQISPQLSSVCLKVFDLDKTQPEGTSTPIPDCIQI
LRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIQGDIARERIKRFMLQVEKSQ
DKSQCGITGMGFRVDGKAFHLFAVTPTSVSLFNLQTQPAARQTLDHIGSNVNSVAMNDRL
ELIIGRPEAVYFYEVDGRGPCWGFEGEKKFLGWFRGYLLCVIADQRSGSNTFNIYDLKNR
LIAHSIVTKEVSHMLCEWGSILLIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQS
QQADAAATAEVLRKYGDHLYMKQDFDEAMSQYIHTIGHLEPSYVIQKFLDAQRIYNLTNY
LEKLHEKGLASKDHTTLLLNCYTKLKDVDKLNVFIKSEDGEIKFDVETAIRVCRAANYHE
HAMFVAKKSGRHEWYLKILLEDLGRYDEALQYISSLDQSQSGVTVKEYGKILIEHKPMET
IEILMGLCTEGASNGTSYSYMLPSPVDFLNIFVHYPRSLMNFLEKYITKVKDSPAQVEIH
NTLLELYLSSDLNFPSMSLENGTTTTSNGNGKLVELPKKEDTKNMENDHEERLQKGLLLL
KTAWPLDQEQPLYDVDLAIILCEMNSFKEGLLYLYEKLKLYKEVIACYMRSHDHEGLIGC
CKRLGDSGKGGDPTLWADLLKYFGELGEECSKEVREVLNYIERDEILPPIMVLQTLSSNP
CLTLSVIRDYIARKLEHESKLIEEDRRMIDKYQEETLTMRKEIQDLRTNARIFQLSKCSA
CTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVVEMKRNLEQNSKNQDQFFKQ
VKNSKDGFSVIAEYFGKGIISKTSKKESGGGSLNSNSNSTHGF
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaatggaggaaattcgagttctttgaggagaaatacgccggaaaatgtttggtc
ccggatgaagtcgctggaaaaatcgagtgttgctccagcggaagggggaaaatcgcggtg
ggatgtgaagatgggactgttagtttactagatcgaggttttaagttcagctatggattc
caagctcacacttcctctgttttattcattcaacaactcaagcaacgcaacttcctacta
actgttggagaagatgaacaaatatctccacaattatcatctgtatgcctcaaggttttt
gacctagataaaactcaaccagagggtacaagcacaccaattcctgattgtatccaaata
ctacgaatattcactaatcaattcccagaagcaaagataacatcatttctagttctagaa
gaagctccaccaatattgctgatagctattggactagacaatggttgcatttattgcatc
caaggtgatattgcacgtgaacgtatcaaacgattcatgcttcaagtggagaaaagtcaa
gataaatcccaatgtggtattactggaatgggttttcgtgttgatgggaaagcttttcat
ttgtttgcagttactccaacttctgtaagcttgtttaacttgcagactcagccagctgct
cgacaaacccttgatcacattgggagtaatgtcaatagtgttgccatgaatgatcgcctg
gagcttataattggtcgacccgaggcagtatatttctatgaagttgatggtagaggtcca
tgttggggttttgaaggagaaaagaagttcctcgggtggtttcgtggatacctcttatgt
gtaattgcagaccaaagaagtggctcaaacaccttcaacatctatgaccttaaaaaccga
ttaattgcacacagtatagtaaccaaagaagtatcccatatgctttgtgaatggggaagc
atactccttatcatgaacgataaatcggctttatgtattggagaaaaagacatggaaagc
aaactcgacatgcttttcaaaaaaaacctttacacagtcgccattaatcttgttcaaagt
caacaagctgatgcagctgcaactgctgaagttttaagaaaatatggtgatcatttatac
atgaagcaagattttgatgaagccatgagtcaatacattcatacaattggtcatctagaa
ccttcttatgtcatccagaagttcctagatgcacaaagaatctacaaccttacaaattac
ctcgagaagctacacgaaaagggtctcgcgtcaaaagaccatactacccttctcttaaac
tgttacaccaaattgaaagatgttgacaagttgaatgttttcatcaaaagtgaagatggt
gagattaaatttgatgtggaaaccgcgattagggtttgtagagctgcgaattatcatgaa
catgcaatgtttgttgctaaaaaaagtggaagacatgaatggtatttaaagattttgctt
gaggatttgggaagatatgatgaggctttgcagtatatttctagccttgaccaaagtcaa
agtggggtcactgttaaagaatatgggaaaatacttatcgagcataaaccaatggaaaca
atcgaaatcctcatgggactttgcactgaaggggcatcaaatgggacatcatattcctat
atgttaccttcacccgttgactttctcaacatttttgttcattatccaagatctttaatg
aattttcttgaaaagtatataacaaaagtcaaagattcacccgcacaagtcgaaattcac
aacactttattggaattatacttgtcaagcgacttaaacttcccatcaatgtcacttgaa
aatgggacaacaactacttcaaatggaaatgggaaattagttgaattacctaaaaaagaa
gatacaaaaaacatggaaaatgatcatgaagaaaggcttcaaaaagggcttttgttgttg
aaaaccgcatggcctttggatcaagaacaaccgttgtacgatgttgatttggctataatc
ttatgtgaaatgaattcttttaaagaagggcttttgtatctttatgaaaagttgaaactt
tataaagaggtgattgcttgttacatgaggtcgcatgatcatgaaggcttgattggttgt
tgtaagaggttaggggattcagggaagggtggtgatccgactttatgggctgatttgttg
aagtattttggtgaattaggggaagaatgttcaaaagaagtaagagaagttttgaattat
attgaaagagatgagattttgcctcctattatggttttacaaacactttcttcaaatcca
tgtcttactctttctgttattcgggattatattgctagaaaattggaacatgagtcaaag
cttattgaagaggatcgtcgcatgatcgataaataccaggaagaaacattgacaatgaga
aaagaaatccaggatttaagaacaaatgcaagaatctttcaactaagcaaatgtagtgca
tgtactttcacacttgatctgccagctgtccacttcatgtgtatgcattcttttcatcaa
cgttgtcttggagacaatgaaaaagaatgtcccgaatgtgcccctgagtacagatctgtt
gttgaaatgaaaagaaacttggaacaaaattccaagaatcaagatcagtttttcaagcaa
gttaagaattcaaaagatggattttcagtaattgctgagtattttggaaaagggattatt
agcaaaactagtaaaaaggaatcaggaggaggatctttaaattcaaacagtaattccacc
catggtttctga
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