Lactuca sativa (garden lettuce): 111895694
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Entry
111895694 CDS
T05352
Name
(RefSeq) SWI/SNF complex subunit SWI3C isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111895694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111895694
03036 Chromosome and associated proteins [BR:
lsv03036
]
111895694
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111895694
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111895694
PBAF complex
111895694
GBAF(ncBAF) complex
111895694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
111895694
NCBI-ProteinID:
XP_023747541
LinkDB
All DBs
Position
6:169654582..169659917
Genome browser
AA seq
767 aa
AA seq
DB search
MPASSSETRNRWRKRKRGEQSRKPRPQPQHQHDDDDEDYEEEDDVDLDQQNQHPEFDDDH
SNSPDPTAATGAVTEVISDGAVRISTFPSVIKHTVNQHHYSVIQSVARERACRAGDSSNG
GMNCVFLENISHGQLQALSAMPKDAPALTGGDSEGSFVITPPPIMEGRGVVKRYGSDRVH
VVPMHADWFSPTTVNRLERQAVPHFFSGKSPDHTPEKYMDCRNRIVAKYMENPAMRLSAS
ECHSFLAGVDADDVTRVVRFLENWGVINYCAAPPNHHEPRNEGSYLTEDSKGELKVPAAA
LRSIDSLIQFDKPRCRIKATDIYPELAVDSDETSDLDTRIRELLSENKCNHCSKSLGIVY
YQSLKEIESLLCLNCYNEGEFVAGHSSLDFIKVDSTKDYGDLEADSWTNQETLLLLEAME
LFNENWVEIAEHVGTKSKAQCILHFVRLSIDETPLENLEVPTASNLPNGNSCAKPQSYAN
GKASIIEDSEFEERLPFEKSGNPVMSQVAFLASAVGPRVAAACAHASLAALSEDDHLGDL
ENDESGSENRVNSENMNGRADPRNPIPIQQKEGEGGSSNITPEKMRDAVRAGLAAAATKA
KLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVESLLIKECEQLERARQRVSAERAL
TISSQFGPPAAGGTTVNRPTGMPGVGPSLLNNTAGPSRQPVSGSPGQPFISGFPSNHHPQ
MSHSQQQQQQPMFGLGPHLPLSAINPSPPSAAHPMLRPVSGSRSGFE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgccagcctcctcctcagagactaggaacaggtggaggaaacggaagcgaggagagcag
tcccgaaaacctagaccgcaaccccagcaccagcacgatgatgacgatgaggattatgaa
gaagaagacgatgtcgacctcgatcaacagaaccaacatcccgaatttgacgatgaccac
agtaattcacccgatcctacagctgccaccggagcagtaactgaggtcatatccgatggc
gctgttcgaatctccaccttcccttctgtaatcaaacatacggtaaatcaacaccattac
tcggtgattcagagtgttgccagggagagagcttgccgagctggagacagtagcaatggt
ggcatgaactgcgtcttcttggagaatatttctcacggccagctacaggcgttgtctgcc
atgcctaaggatgctccagctttgactggcggagactcagaagggtcttttgtaattaca
cctcctcccatcatggagggtcgtggtgttgtcaagagatatggttcggatcgagtacat
gttgtaccaatgcacgcagattggttttcaccaacaactgtaaaccgattagaaagacag
gcagtgccacattttttctccgggaagtcaccagaccacactccagaaaagtacatggat
tgtcgcaaccgaattgttgctaaatacatggagaatccagcaatgaggttgtcagcttct
gagtgccatagttttttagctggtgttgatgctgatgatgtaactcgagttgtaaggttt
cttgaaaactggggtgtaatcaactactgtgctgctccaccaaatcatcatgaacctaga
aatgaaggctcatatctgacagaagattcaaaaggagaattaaaagtgccagcagctgct
ttgcgatctattgatagcttaatccaatttgataaaccaagatgtaggataaaagcaaca
gatatatatccagaattagctgttgatagtgatgaaacatctgatttggacacaagaatt
cgtgagctattatctgagaataagtgcaatcattgttctaaatctcttggtattgtgtac
tatcagtctctcaaagagattgagtcactattatgcttgaactgttacaatgagggggaa
tttgttgctggtcattcaagtctggattttatcaaggttgattccacaaaagattatgga
gatcttgaagcagacagctggaccaatcaggagacattattgttgttggaggctatggaa
ctcttcaatgagaattgggttgagattgctgagcatgttgggaccaaatcaaaggctcaa
tgtatcctccactttgtacgcctttctatagatgagactcctttggaaaatcttgaagtt
ccaactgcttcaaatttgcccaatgggaattcatgtgcaaaaccacaatcatatgcaaat
gggaaagcatctattattgaagactctgaatttgaagagagattgccatttgaaaaatcc
gggaatcctgtaatgtctcaggttgcttttttggcatctgcagtgggaccaagagtggct
gcagcttgtgctcatgcatcgttggcagcattgtctgaggatgatcatctaggtgatctg
gaaaatgacgaatctgggtctgaaaatagggtaaattcggaaaacatgaatggtcgtgca
gatcccagaaacccaattccaattcaacagaaagaaggtgaaggaggcagtagtaatatc
actcctgaaaagatgagggatgcagtcagagctggtcttgctgctgctgcaaccaaagca
aagctttttgcagatcatgaagaacgagaaatccaaaggctatctgctaatatcatcaat
catcagttaaagaggttagagctgaagctgaagcaatttgcagaagtggaaagcttatta
atcaaagaatgtgaacagctcgaaagggcaaggcaaagggtctcagccgagcgagcactc
accatctcctcccaattcggaccccctgctgctggcggcacaaccgtcaacagaccaacc
ggcatgccaggtgtcggtccctcattgctcaacaacaccgctggacctagccgccaaccc
gtctccggatcgccaggtcagccattcatttcggggttccccagtaaccaccacccacag
atgtctcattctcaacaacagcagcagcagcctatgtttgggctgggcccacacctgccc
ctctcggcgatcaacccatctccgccatcagccgcccatcccatgttgagacccgtgtcg
ggaagtagatctggttttgagtaa
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