Lactuca sativa (garden lettuce): 111896046
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Entry
111896046 CDS
T05352
Name
(RefSeq) pectate lyase isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111896046
Enzymes [BR:
lsv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111896046
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111896046
NCBI-ProteinID:
XP_023747838
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Position
8:81331334..81334363
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AA seq
453 aa
AA seq
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MKANHCGSVSPVVPLCNSMPFFFLAFVLIVPTVVAGTMKKNIGIGHLDSFIKEQVQNATK
TAINAYNPDPESVVHNFNKLVHESLKGTNSTRRNLKGKKCMATNPIDRCWRCNKNWANNR
QDLAKCVRGFGEHTTGGMGGRYYVVTDSSDHDVLTPKKGTLRYGVIQDKPLWIIFERPMV
ITLKEELMINHDKTIDGRGVIVHIAYGAGLTIQFVHNVIIHGIRIHHIVSKNGGYIRDSL
AHFGLRTVSDGDGISIFGASKVWIDHVSLDHCADGLIDAIMASTALTISNCKFNYHNDVM
LLGADDNFTGDEIMQVTVAFNRFGKGLVQRMPRCRWGFFHVVNNDYNKWEMYAIGGSMNP
TIVSQGNRFRASDNVHAKEVTHRDHFPQKVWKHWKWRTVNDLFLNGAFFVPSGDHSEVAH
KLKNFMVQAKDGSCVGRLTRYAGMLKCTAGRPC
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgaatcactgtggttcggtttccccagtggttcccttatgcaactctatgcct
ttcttcttcttggcttttgtcctcattgtcccgaccgttgtagcggggacaatgaagaaa
aatataggtattggacatttagacagcttcattaaagagcaggttcaaaacgcaaccaag
accgccataaatgcatataatcctgaccctgaatcggtggtccacaatttcaacaaacta
gtccacgagtctttaaaaggaacaaattctacaagaaggaacctaaagggcaagaaatgt
atggctacaaacccgatagacagatgttggaggtgcaataagaattgggcgaacaaccgg
caggatttagcaaaatgtgtgcgtggatttggagagcataccacaggtggcatgggtggc
cgctactatgtggtgacggattcctctgatcatgatgttttgactccaaagaaaggaacc
cttcggtatggagtcatccaagataaaccgctttggattatctttgaaagacctatggtt
attacccttaaagaagaacttatgataaaccatgacaagacaatcgatggtagaggggtt
attgtccacattgcttatggcgcggggctcaccattcaatttgttcataatgtcatcatt
catgggatccgaatccaccatattgtgtctaagaatggtgggtatattagggattcctta
gctcacttcggattaagaacggttagtgatggcgatggtatctccatttttggtgctagc
aaagtgtggatcgatcatgtctcactcgatcactgcgccgacggtctaattgacgccatc
atggctagcaccgctttaaccatctccaactgcaaattcaactatcacaacgacgtgatg
ttgttgggggcggacgataattttactggagacgagattatgcaagtcacagtcgcattc
aacagatttggtaaaggattggttcaaaggatgcctagatgtcgttggggattctttcac
gttgtaaacaacgattacaacaaatgggaaatgtacgctataggtggaagcatgaaccct
actattgttagtcaaggcaacagatttagggcatccgataatgtccatgcaaaggaggtt
acacatcgggatcactttcctcaaaaagtgtggaaacattggaagtggcgaacagtgaat
gaccttttccttaacggagccttttttgtaccatcaggcgaccattcagaagtagcacat
aaactgaaaaactttatggttcaagcaaaggatgggtcatgtgtgggtaggctcacccgt
tatgcagggatgctcaagtgtacggccggtagaccatgctaa
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