Lactuca sativa (garden lettuce): 111896102
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Entry
111896102 CDS
T05352
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111896102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111896102
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
111896102
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
LRR_NXF1-5
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
111896102
NCBI-ProteinID:
XP_023747894
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Position
8:complement(82558112..82561402)
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AA seq
583 aa
AA seq
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MGFSFPEDLLEHVFSFITSDKDRNAVSLVCKSWYEIERWCRRRVFIGNCYAVSPGIVIRR
FPDLKSVELKGKPHFADFNLVPDGWGGYVYPWIVEFSRAYPWLEEIKLKRMVVTDESLEL
ISKSFKSFKVLVLSSCEGFSTDGLAAIAANCRNLKVLDLRESEVEELSGHWLSHFPDSFT
TLESLNIACLGSEVSFSALEHLVARSPNLKTLRLNRAVPLDKLSTLLHRAPQLVEFGTGA
YSAETRPSVYSSLAEAFSHCKELKDLSGFWDAVPSYLPAIYPVCSRLTSLNLSYSPIQSP
DITKIITQCPNLQRLLVLDYIEDAGLNALAMSCKNLQELRVFPSEPYVMNSNVSLTEQGL
VSVCEGCPKLQSVLYFCRQMSNSALFSIARARPNLTCFRLCIIEPQAPDYLTFEPLDSGF
GAIVEHCKDLTRLSLSGFLTDRVFEYIGAHGKKLKMLSLAFAGDSDLGLHHVLSGCERLS
KLEIRDCPFGDKALLGNAAKLETMRSLWMSSCSVSFGACKLLGEKMGRVNVEVMDESDYL
ELDSKSDGCLVEKLYVYRTVSGPRDDMPPFIYTMGQDSAYRLN
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgggattctcgtttccggaggatctgttggaacatgttttctcgttcataacctctgat
aaggacaggaatgccgtttcattggtgtgcaagtcgtggtacgagatcgagcggtggtgc
cggaggagggttttcattgggaactgttacgctgtgagcccggggattgtgattaggagg
tttccggacttgaaatcggtggagttgaaagggaaaccgcattttgcggattttaatttg
gttccggatggttggggaggatatgtttacccatggatcgttgagttttcaagagcgtac
ccttggttagaggagataaagcttaagcggatggtagtcactgatgagagcttggagttg
atttccaagtcttttaagagctttaaggttttagttctgtcttcatgcgagggtttcagt
accgatggactcgctgccattgccgctaattgcagaaatttaaaagtactagatttgcgc
gagagtgaagtggaggagctaagtggacattggttaagtcacttccctgatagtttcacc
acattggaatctcttaacatagcttgcttgggttctgaggtaagtttctcagcccttgag
cacctggttgcccgctcacccaacttaaagactcttcgactcaaccgtgctgtacccctt
gacaagctctccacacttctacacagagccccacagctggttgagtttggcacaggtgcc
tattctgcagaaactcgacccagtgtgtattcaagtttagcagaagctttctcacattgc
aaagagcttaaagacctttctgggttttgggatgctgttccttcatatctcccagccatt
tatcccgtttgttctaggctcacttcattgaacttgagctattcccctattcaaagccct
gatatcaccaaaatcataactcagtgccctaatctccagcgtctattggtactggattac
attgaggatgctgggcttaatgcccttgctatgtcatgtaagaacctacaagagctaagg
gtgttcccttctgaaccttatgtaatgaattcaaatgtctccttaacagaacaaggcctt
gtttctgtttgtgaagggtgccctaagcttcagtcagttctctacttctgtagacaaatg
tcaaattctgcattgttcagcattgctagggcacgtcctaacttaacatgctttcgtcta
tgcattatcgaaccccaagcccctgattacctcacatttgaaccactggattccggtttc
ggagccatagtagaacactgtaaggacctcacacgtctttcattatccggtttccttaca
gatcgtgtgttcgagtacattggggcacatggtaagaagttaaagatgctttctttagct
tttgctggcgatagtgatttagggttgcatcatgttttatcggggtgtgagaggttaagt
aagttggagattagggattgcccttttggggataaggctttgttgggtaatgctgctaag
ctggagacaatgcgatccctttggatgtcttcatgttcagttagttttggagcgtgtaaa
ttgcttggtgaaaagatgggtagggttaatgttgaggttatggatgagagtgattacttg
gagttggattcaaagtcggatggttgtttagttgaaaagctttatgtatatcgaacagtc
tcgggtccaagggatgacatgcctccctttatatacacaatgggtcaagactctgcatac
aggttgaattaa
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