Lactuca sativa (garden lettuce): 111896291
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Entry
111896291 CDS
T05352
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111896291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111896291
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111896291
U7-dependent histone pre-mRNA processing factors
111896291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
111896291
NCBI-ProteinID:
XP_023748063
LinkDB
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Position
2:complement(230842221..230846680)
Genome browser
AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRIASTVDAVLL
SHSDTLHLGALPYAMKQFGLSAPVYATEPVFRLGLLTMYDHYLSRKQVSEFDLFTLDDID
SAFQNVTRLTYSQNCHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALSNQPSRRQRDQEFIDAILNTLRGNGNVLLPVDTAG
RILELLLILEQYWEQHHLTYPIFFLTHVSSSTVDYVKSFLEWMSDSIAKSFEHTRDNAFL
LKHVTLLINKTELENIPEGPKIVLASMASLEVGFSHDIFVEWAADSRNLVLFTERGQFGS
RARILQSDPPPKAVKVTLSKRVPLVGEELAAYEEEQEKIKKEEALKASLVKEEESNSKAV
VGTDVSKSDPMIIDGHAQADVVGEAYRDVLIDGFVPPSSVAPMFPFYDDTSEWDDFGEVI
NPDDYVIKDEDMDMGSMAVGGDVDGKLDEGTASLMLDTTPSKVVSSELTVQVKCCLVYMD
FEGRSDGRSMKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTS
DLCAYKVQLSEKLMSNVLFKKLGDYEIAWIDSEVEKTENGSISSLLPLSTTPHTPPPHKS
VLVGDLKMADFKQFLAGKGVQVEFAGGALRCGEYVTLRKVGDASQKGGAAAIQQIVIEGP
LCDEYYKIREYLYSQFYSL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggggacatcggtgcaggtgacgccactgtgtggagtgtacaatgaaaacccattatcg
tatctggtctccatcgatggcttcaactttcttatcgattgtggttggaacgatcacttc
gacccctctctccttcaacctctatccaggattgcttcgacggtagatgccgtgttgttg
tcacattcagatacactacatcttggtgctttaccctatgccatgaaacaattcggactt
tctgctccagtttatgcaacagaacctgtcttcagattagggctattaactatgtatgat
cactacctctcccgcaagcaagtatctgagtttgatttgttcacactggatgatattgat
tctgccttccaaaatgtgacaagattaacctactctcagaattgtcatttatctggaaaa
ggggagggtatagtgattgcacctcatgttgctggtcaccttttgggaggtactgtttgg
aaaataactaaagatggagaagatgtgatatatgctgttgacttcaatcatcgaaaagaa
aggcatttaaatggaacagttttagaatcttttgttcgaccagctgttcttataacagat
gcatataacgctttgagtaatcagccttctagacgtcaaagagatcaagaatttatagat
gctatactgaacactctaagaggcaatggaaatgtgttgttgcctgtggacactgctggc
cgaatactggagctgcttttgatactcgaacagtattgggaacaacatcatttgacctat
cctatcttctttctcacgcatgtgtcatcaagcacagttgattatgtcaagagtttcctt
gagtggatgagtgattcaatagcaaagtctttcgagcacactcgtgataatgccttcctt
ttgaagcatgttactcttctgatcaacaagactgaactagaaaacatcccagagggccca
aagattgtcctggcttctatggccagtttagaagtgggattttcacatgatatatttgta
gaatgggctgctgattcaagaaatcttgttctttttacggaaaggggacagtttggtagt
cgtgcacgaatccttcagtcagatccacctcctaaagctgttaaagtaaccctttcaaag
agagttccattagttggtgaagagttagctgcatatgaagaagagcaagaaaagattaaa
aaggaagaggctttgaaagccagtcttgtaaaggaagaggaatcaaattcaaaagctgtg
gttggcactgatgtttccaaatctgacccaatgatcattgatggccatgctcaagctgat
gttgttggggaagcatatcgtgatgttttgattgatggatttgttccaccttcgagtgtt
gccccgatgttccctttttatgatgacacctctgaatgggatgattttggagaagtcatt
aatccagatgattatgtgatcaaggatgaagatatggacatgggatctatggctgtgggt
ggagatgttgatggaaaacttgatgaaggcactgctagtttgatgcttgacacaacccca
tcaaaagttgtatcttctgaacttactgtccaagtgaaatgttgtttggtttacatggat
tttgaaggacgttctgatggtcgctccatgaagtcaattcttgcacatgttgctcccttg
aaacttgttttggtacatggatcagctgaggcaaccgagcatttgaagcaacactgtctg
aaacatgtttgtccccatgtatatgctccacaaattgaagaaacaattgatgtcacatca
gatttatgtgcttacaaggtgcaactctctgagaaactgatgagcaatgttctgtttaag
aagcttggagattatgaaatagcgtggattgattcagaggtggaaaagacagagaatggc
agcatctcttcactactccccctttcaacaacacctcatactcctcctcctcataagtct
gtgcttgttggagatctaaaaatggcagattttaagcagttccttgctggaaagggtgtc
caggtggaatttgctggtggggctctgcgttgtggggagtatgttacattgaggaaagtt
ggtgatgccagtcagaagggtggtgctgctgctatccaacaaatagttattgaaggtcca
ctgtgcgacgagtattacaagattcgggagtacctttattcccagttttattcactttag
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