Lactuca sativa (garden lettuce): 111896534
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Entry
111896534 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111896534 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111896534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111896534
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111896534
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111896534
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111896534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
111896534
NCBI-ProteinID:
XP_023748277
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All DBs
Position
4:294977062..294980657
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AA seq
546 aa
AA seq
DB search
MNPHHNSNQNPATPSAAQQVNSVTNQQTCNGNVGGLLPNNRPIAPPSCFMNFPNQPFPLQ
NTMAQFPTGFPGFNPQQNFNPFPVNQFNPSQFFPNNSMNRPVYNPNVALPNEQVIMQNTI
QNIYQLLQLQSQSQSQNPNYPQCPPGNFPMFQNQIPNVMSHQNPGFLPNQQFSMPNFNGP
LQHANQVQHLQGNPFLPHAPNSVQPQQSPNLLLQNQIPQGVVPQNHNFLPNQMNPSGPMQ
IANQGQKGQQGTSILPQKPSPTVTNFQEKHGNNINGGWTSPHKNFTGNKKNDTSQSHKGF
KSQFHHGKHPYNGNMNQAEGKNNAAVNSRPKNFISTKFEKKVPSLKYTEQEIKQWREARK
KHYPTNVNKSKEEEASVLRRQQLKEILTKQAELGCEVADIPSHYLSGPEKHIQKHEKERF
KKGKFQKKRGNKFQNDRITKKTRSENPNKPNENKRDPSLLQKLLTKDIKRDQNHLLQVFR
FMVVNSFFSGQPEKPLRFPDVIVRETGPGVAGEVAGEPDSLVVEGGEKVVEKVDVDSDEE
EGEITD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcatcataattccaaccaaaatccagcaactccttccgcagctcaacaggtt
aactctgtcactaatcaacaaacctgcaatggaaatgttggaggattattgcccaataac
agaccaatcgcacctccatcttgtttcatgaatttccctaatcagccttttcccctgcaa
aatacaatggctcaattccctactggttttcctggattcaatccacagcagaattttaat
ccctttcctgtaaaccagtttaatccttctcagttctttcctaacaattccatgaatcgt
cctgtatacaacccaaatgttgctttacctaatgagcaagtcattatgcagaatacgatc
caaaatatctatcagcttcttcaattacaatcacaatcacaatcacagaaccccaattat
ccccaatgtcctcctggtaatttccccatgttccagaaccagattccaaatgttatgagt
catcaaaaccctggatttcttccaaatcagcagtttagcatgcctaatttcaatggcccc
ttgcaacacgctaatcaagtacaacacttacaagggaacccgtttctacctcatgctcct
aattcagttcaaccacagcaatcaccaaatctccttttacagaaccagattcctcaaggt
gtggttcctcaaaatcacaactttcttccaaatcagatgaatccaagtgggcccatgcaa
attgctaatcaaggacaaaaaggtcaacaagggacctcaattttaccccagaaaccttct
cctacagtcacaaattttcaggagaaacatggaaacaacattaatggtggatggacttct
ccacacaagaacttcacaggaaataaaaagaatgacacctcacaatcacataaaggattc
aagtctcagtttcatcatggaaaacatccctacaatggcaatatgaatcaagcagagggt
aagaacaatgctgcagtaaattctaggcctaaaaatttcatttccaccaagtttgaaaaa
aaggtaccctctctgaagtatacagagcaagaaattaagcagtggcgtgaggctcgtaag
aagcattatcccacaaatgtcaacaaatccaaggaagaagaggcatctgtattacgtcgt
cagcaattgaaggaaatattgacaaaacaggcggaactaggctgtgaagtagccgatatt
ccatcgcattatttatcgggtcctgaaaaacacatccaaaaacacgaaaaggaacgattc
aaaaaaggaaaattccaaaagaaaagaggaaataaatttcaaaatgatcgaatcaccaag
aaaacaagatcagaaaaccctaataagccaaacgagaacaagcgggacccatcactttta
caaaaacttttgacaaaagacatcaagagagaccaaaaccatcttttacaagttttccgc
ttcatggtggtcaactctttcttctccggtcaaccggaaaagcctttgagatttccggat
gtaattgtgagagaaacgggtcccggtgtcgccggagaagtcgccggagaaccggatagt
ttggttgttgaaggtggcgagaaggtggttgagaaagttgatgttgattctgatgaagaa
gagggagaaatcactgattga
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