Lactuca sativa (garden lettuce): 111896589
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Entry
111896589 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111896589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111896589
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111896589
Spliceosome [BR:
lsv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111896589
Complex B
111896589
Complex C
U2 SnRNP specific factors
111896589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UBA_HOIP
Motif
Other DBs
NCBI-GeneID:
111896589
NCBI-ProteinID:
XP_052622173
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All DBs
Position
8:complement(337087006..337091295)
Genome browser
AA seq
756 aa
AA seq
DB search
MSKRKFGFEGFGINKQSTYSFERPEAPQRLYVPPSSRGGGHDHYEDTDLDNIEYEDPSHN
AANNDEGGGGADDGEIDPLDAFMEGIHEEMRAAPPPKAKEKADKYRDDEEDDPMESFLRA
KKDVGLTLASEALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPIVLDKKKIEPIAALDHS
SIDYEPFNKDFYEEKPSISGMSEQDVAEYQKSLAIRVSGFDVPRPIKTFAEAGFSIELMK
AIAKQSYEKPTPIQCQSLPIVLSGRDIIGIAKTGSGKTAAFILPMIVHIMDQPELAKEEG
PIGVVCAPTRELAHQIYLEAKKFAKANGIRVSAVYGGMSKLEQFKELKSGCEIVVATPGR
LIDMLKMKAVTMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRIE
KLAREILSDPVRVTVGEIGMANEDITQEVQVLPADTDKLQWLLEKLPGLIDNGDVLVFAS
KKATVDEIESQLSGKGFKVAALHGDKDQASRMEILNKFKSGIYHVLVATDVAARGLDIKS
IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFASDLVNSLIAAGQNVS
MELMDLAMKDGRFRSKRDARKGGGGGGGGGKRAKGRGGGGGNRGVRGVDFGLGIGYSSEP
KAAPPSGSAVNSLRTGVMAQFKSSFVAASNNSGNQGSKKMVLPGFVSGGSIGGTPPTPMP
TYHNREQQQQQQGTSESNSSSSRSSRERRRPSGWDR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagagaaagtttgggttcgaaggcttcggtataaacaaacaatcgacgtatagt
ttcgagcgacctgaggccccccagcggctctacgttcctccctcgtctcgtggtggtggc
catgatcactacgaagacaccgacctcgacaatattgagtatgaagatcccagccacaac
gcggccaataacgacgaaggaggcggcggagcagatgatggcgaaatcgacccgcttgac
gcctttatggaagggattcatgaggagatgagggcggcgccgcctccgaaggcgaaggag
aaggcggataaatatagggacgacgaggaggatgatccgatggagagttttttgagagcg
aagaaggacgtggggttgaccttggcgtctgaagctcttcacgctggttataattcagat
gaggaggtctatgctgctgccaaggcggttgatgctggaatgttagaatatgattccgat
gataatcctatagttctcgacaagaagaagattgagcctattgctgctctggatcacagt
tcgattgattacgaaccgtttaacaaagatttctacgaagaaaaaccatccatatcaggt
atgagcgaacaggatgttgctgagtatcagaaaagtttagccatccgtgtttcagggttc
gatgttccaagaccaataaagacatttgcagaggctggattttctatagagctaatgaaa
gctatagcaaaacaatcgtatgaaaaacctactccgatacagtgccagtctttgccaatt
gtgctatcaggtagagatatcattggcattgcaaaaactgggtcagggaagactgctgcc
ttcatccttccgatgattgttcacattatggatcaacctgaactggctaaagaagagggc
cccattggagtagtctgtgcacctactagagaactggcacatcaaatatatttggaggcc
aagaaatttgcaaaagccaatggtattcgtgtgtctgcagtttatggtggaatgtcaaaa
cttgagcagtttaaagaactgaagtcagggtgcgagatagttgttgcaacacctgggaga
ctgatagacatgctaaagatgaaagcagtgacaatgtcaagagctacttacttggtcctt
gatgaagctgataggatgtttgaccttggatttgaaccccagataaggtccattgtaggt
cagatcagaccagatcgccaaacattgctgttttcagcaacaatgccccgtagaattgaa
aaacttgccagggagatactgagtgacccagtgagagttacagttggagagattggaatg
gctaatgaggatatcacccaggaagttcaagtacttcctgcagatactgataaactgcaa
tggctgcttgaaaagctaccagggctgattgataatggtgacgtattggtttttgcttca
aaaaaggcaacagtggatgagatagaaagccagctatccgggaaggggtttaaagttgct
gctcttcatggggataaagaccaggcatctcgtatggagatattgaacaagtttaaatct
ggaatatatcatgttcttgttgcgactgatgttgctgctcgtggtcttgacataaagtca
attaagtctgtggttaattttgatatagctagagacatggacatgcatgtgcatcgaatt
gggagaacaggacgtgctggtgataaagatgggactgcttacactcttatcacacataag
gaggctcgttttgctagcgacttggttaacagtttgattgcagctggtcaaaatgtgtcc
atggaacttatggaccttgctatgaaggatgggaggtttagatcgaagcgagatgctaga
aaaggagggggagggggagggggagggggcaaaagggcaaaaggaaggggtgggggtggt
gggaatagaggtgtgcgtggtgtggattttggtttggggataggatacagctcagaaccc
aaagcagctcctcctagtggctcagctgttaattcccttaggacgggagtgatggctcag
ttcaaaagcagctttgttgctgcatccaataattctggaaatcaggggagcaagaaaatg
gtattgcctggctttgtttctggtggttccataggtggaactccccccacccccatgcca
acttatcacaacagagaacagcagcagcagcagcaggggacttctgagagcaacagcagc
agcagcagatcatccagagaaagaagaaggccttctggttgggaccgctag
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