Lactuca sativa (garden lettuce): 111896799
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Entry
111896799 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111896799
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111896799
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111896799
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Reovirus_L2_MT1
Motif
Other DBs
NCBI-GeneID:
111896799
NCBI-ProteinID:
XP_023748555
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All DBs
Position
9:84230311..84233267
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AA seq
586 aa
AA seq
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MASTESSNPNRALTDTRFSDLNPPLSDEVLDALSTSGFDFCTPVQAATIPLLCSYKDVAV
DAATGSGKTLAFVVPLVEILRRTTSVKPHQVLGIIISPTRELSSQIFHVAQPFISSLSDV
KPMLLVGGSEVKVDMKKIEDEGANLLIGTPGRLHDIMERMDILDFRNLEILILDEADRLL
DMGFQKQINSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSLEHAAT
SSKTPSGLHIEFIKCEADKKSSQLVDFFIKNKSKKMIVYFMTCACVDYWGVVLPQLTALK
GVSLISLHGKMKQIAREKALASFTSLQDGILLCTDVAARGLDIPGVDCIVQYDPPQDPNV
FVHRVGRTARLGRQGSAIVFLLPKEEAYVEFLRIKRIPLEEKMCCEDALDVVPLIRDAAK
KDRDVMEKGLRAFVSYIRAYKEHHCNFILRWKDLEIGKLGMGYGLLQLPSMSEVKQNSLS
TAGFIAVEDLNLEEIKFKDKSREKQRKKNLQIKKEKPQEEKTHKAKAAMKNVTMVMKKRT
AKQRRAKQSAEDDDELTRDYRLLKKLKKGAINETEFAKLTGTEDLL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacggaatcttcgaatccaaacagagcattaactgatactcgtttctccgac
ctcaatccgccgctttccgatgaagtcctcgacgccctctctacttcaggcttcgatttc
tgcactcccgttcaggcagccactatacccttgttatgcagctacaaggatgtcgcggtc
gacgccgccaccggttcgggcaaaaccctagcatttgttgttccactcgtcgagatcctc
cgtcgcacaacgtctgttaaacctcaccaggtcctgggaattatcatatctccaacgaga
gaattatcatcacaaatattccatgttgcacaaccgtttatttcatcactgtcagatgtt
aagccaatgcttctcgttgggggatcagaagttaaagtagacatgaagaaaattgaagac
gaaggagcgaatttgttaataggaacacctggaagactacatgacataatggaacgcatg
gatatcttggattttcgtaatcttgagattttgattttggatgaagctgatagactactg
gatatggggtttcaaaagcagataaattctattatatctcgcttacccaagcttcgtaga
actggtcttttttcagctactcaaacagaagctgttgaagaactatcaaaagcaggatta
agaaatcctgtaagagttgaagttcgtgcagaaacaaaatcattagaacatgcagcaacc
tcatcaaaaacaccctcaggccttcacattgagtttatcaaatgtgaagcagataagaaa
tcatcacagcttgtggacttctttattaagaacaagtctaagaagatgatagtgtacttt
atgacatgtgcttgtgtggattattggggagttgtacttccacagcttactgcattgaag
ggggtgtctttaatttctcttcatgggaagatgaaacagatagcaagggagaaagccttg
gcttcatttacatctcttcaggatggaatccttctgtgcactgatgttgcagctcgtgga
cttgacattccaggggttgattgcatagtgcagtatgatcctcctcaagaccctaatgta
ttcgttcacagagttgggaggactgctagattagggcgtcaaggaagtgccattgttttt
cttctaccaaaggaagaagcatatgtggagtttttgcgcattaaaaggattccgttagaa
gagaaaatgtgctgcgaagatgcgcttgatgtggttccccttatacgtgatgctgctaag
aaagatcgtgatgtgatggaaaaaggtctaagggcatttgtgtcctacattcgtgcttat
aaagaacatcattgcaatttcattctcagatggaaagatctagagattggaaagttaggg
atggggtatggtttattacagctaccttcaatgtcagaggtaaaacaaaattcactttct
acagcgggttttattgctgttgaagatttaaatcttgaagagatcaagttcaaggataaa
tctcgagagaaacaaagaaagaaaaacttgcaaataaagaaagagaagccacaagaagaa
aaaacccacaaggctaaagctgctatgaagaacgtgactatggtgatgaagaagagaaca
gctaaacaaagacgtgctaaacagtctgctgaggatgatgatgaacttactagagattat
cgccttttgaaaaagcttaaaaagggggctattaatgaaaccgagtttgctaaactaact
ggaactgaagacttgctttga
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