Lactuca sativa (garden lettuce): 111896912
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Entry
111896912 CDS
T05352
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111896912
04121 Ubiquitin system [BR:
lsv04121
]
111896912
Enzymes [BR:
lsv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111896912
Membrane trafficking [BR:
lsv04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
111896912
Ubiquitin system [BR:
lsv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111896912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
Zn_ribbon_19
zf-C3HC4
zf-rbx1
zf-ANAPC11
zf-RING_UBOX
Zf_IFT144_1st
zf-RING_5
DUF7685
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
111896912
NCBI-ProteinID:
XP_023748650
LinkDB
All DBs
Position
1:complement(87412370..87414131)
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AA seq
342 aa
AA seq
DB search
MDEDRESTRYWCHQCNRPVVPIIEVLTIKCSSCHGEFMEEMDSVTSDHHHHHREDVPDRG
QSLWAPVFLGMMNNPRRRRRFSHIDFDEDNEEEDRHRSYNFREGGDSDLDREFESIMRRR
GRSSAAILHLLQGVRSGSENNTSQERDHDRERVILINPFNQTIVVQGSGGGTHPIGSLGD
YFSGPGLDELLQHLSEIDPNRHGTRPAQKQAVEAMPTVKIDENSVQCSVCLDDFEVGNEA
KEMPCKHKFHSKCILPWLELHSSCPVCRFELPSDETRPGQETNGSGGSEDGDDRNLRRLS
LPWPFSTLFGPTTGPQPGSMPSASSSGSSPWARRAYGEDEEQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatagagagtcaacaagatactggtgtcatcaatgtaataggcccgtagtc
ccgatcatagaagtgctaacaatcaagtgttcgagttgtcatggtgaattcatggaggaa
atggatagtgtcacaagcgaccaccaccaccaccaccgtgaagatgttcctgaccgtggt
cagtcgttatgggctccagtctttctcggcatgatgaacaaccctcgccgtcgccggaga
ttttcccacatcgactttgatgaagataacgaggaagaagaccgccaccggagctacaac
ttccgggagggaggagactctgatttggaccgtgagtttgagtccatcatgaggaggcgg
ggccggagctccgccgccatcctccacctcctccaaggtgttcgatctggatctgaaaac
aatacatcacaagaacgtgatcatgatagggaacgtgttattctgattaatccttttaat
cagacaatagttgttcaaggtagcggtggtgggacccatccaattggttctttaggtgac
tatttttcgggtcccggattagacgaattactacaacatttatctgaaattgacccgaat
agacacggaacccgacccgcacaaaaacaggcggtggaagcaatgccaactgtaaaaatc
gatgaaaattcagttcaatgttcggtttgtttggatgattttgaagttggaaatgaagct
aaagagatgccatgtaaacataagtttcatagcaaatgtattctaccatggttagagctt
catagctcgtgtcccgtttgcaggtttgagttaccttctgatgaaacaagacccggccaa
gagacaaacgggtcgggtggtagtgaagatggggatgatagaaatttgagacgtttgtct
cttccttggccttttagtaccttattcgggccaacaactgggccccaacccggctcgatg
ccatctgcatcgagctcgggttcgtcaccatgggctcgtagagcctatggtgaggatgag
gaacagtaa
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