Lactuca sativa (garden lettuce): 111897619
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Entry
111897619 CDS
T05352
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03030
DNA replication
lsv03410
Base excision repair
lsv03420
Nucleotide excision repair
lsv03430
Mismatch repair
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111897619
03410 Base excision repair
111897619
03420 Nucleotide excision repair
111897619
03430 Mismatch repair
111897619
03440 Homologous recombination
111897619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsv03032
]
111897619
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111897619
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
111897619
DNA replication proteins [BR:
lsv03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
111897619
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
111897619
MMR (mismatch excision repair)
DNA polymerase delta complex
111897619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
111897619
NCBI-ProteinID:
XP_023749352
LinkDB
All DBs
Position
5:complement(179312307..179321081)
Genome browser
AA seq
1087 aa
AA seq
DB search
MNKGNGRKRPAQQPPVSQQPPKQHAAEPAMEEEDMDEDVFIEENLIDEDELILRDMQDRE
ALATRLEKWKRPALSTGYQSQSENIVFQQLEIDYVIGESHKGLIPNSSGPAAIIRIFGVT
KEGNSVCCNVHGFEPYFYISCPSGMGPDDISRFHQLLEGRMREVNRSNNVPKFIHRIELV
QKKSIMYYQQHSSQPFLKIVVTLPTMVASCRGILDKGIQIDGIGMKSFMTYESNVLFVLR
FMIDCNIVGGNWIEVPAHKYKKTIKSLSSSQLEFDCLYSELISHAPEGEFSKMAPFRILS
FDIECAGRKGLFPEPTHDPVIQIANLVTLQGEEQPFVRNVMTLKSCSPIVGVDVMSFDTE
REVLLAWRDFVREIDPDIIIGYNICKFDLPYLIQRAETLGITEFPLLGRIRNSRVRVKDT
TFSSRQYGTRESKEVTLEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLNEQKEDVHHSII
SDLQNGNPETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIK
VLSQLLRKAKQKNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMM
AYNLCYCTLVTSEDAKKLNLPPECVNKTPSGETFVKSDLQKGILPEILEELLAARRRAKA
DLKEAKDPLVKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTK
KLVEDKFTTLAGYEHNAEVIYGDTDSVMVQFGVPTVDEAMKLGREAADYISATFIKPIKL
EFEKVYFPYLLISKKRYAGLYWTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILI
DRDVPGAVQFVKDTISDLLMNRMDLSLLVITKGLTKTGEDYEVKAAHVELAERMRKRDAA
TAPNVGDRVPYVIIKGAKSAKAYEKSEDPIFVLENNIPIDHGYYLENQIKKPLLRIFEPI
LKNASSELFHGSHTRSISISTPSNSGIMKFAKKQLSCLGCKAKISGTDETLCSHCKEREA
EFYCKSVASVSELEKLFGKLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKV
QLERWNF
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagggcaacggcaggaaacggccggcgcagcaaccaccagtgtcgcaacaacct
ccaaagcaacatgctgcagagcccgccatggaagaggaagacatggacgaggatgtattc
attgaagaaaacctcatcgacgaagatgaactcattctccgcgatatgcaggaccgggaa
gccctcgcaactcgtcttgagaaatggaagcggccggcattatctacagggtaccagtct
cagtcagagaacatagtttttcaacaattggagattgattacgtgattggagagagccac
aaaggtttgatacctaattcatctggtcctgctgctatcatcagaatatttggtgtaacc
aaggaagggaatagtgtatgctgtaatgttcatggatttgaaccatacttctatattagc
tgcccttctggaatgggccctgatgacatatcccgctttcatcaacttcttgaggggagg
atgcgggaagtcaacaggagcaacaatgttcctaagtttatccatcgtatagaactagtt
caaaaaaagagcatcatgtactatcagcaacatagttctcagccttttcttaaaattgtt
gttacattgccaaccatggttgctagttgccgaggcattcttgacaaagggatacaaatt
gatggcattggcatgaaaagcttcatgacatatgaaagtaatgttctttttgttcttcgg
ttcatgatcgattgcaacattgttggtggcaattggattgaagttccagctcacaaatac
aagaagacaataaagagcctttcatcttctcagttagagtttgattgcctttattcagaa
ctcattagccatgctccagaaggagaattttcaaaaatggctccatttcgcatattgagt
tttgacatcgagtgtgctggtcgaaagggtcttttccctgagcctacacatgatcctgtt
attcagattgcaaatctggtcacacttcagggagaggaacaaccatttgtgagaaatgtc
atgaccctaaagtcatgttcaccaatagttggtgttgatgtcatgtcatttgacacagag
agagaagttttactggcttggagggattttgtcagggaaattgatccagatatcataatt
ggctataacatttgcaaattcgacttgccatatctgattcagagggcggagacattgggg
attactgagtttccattattggggcgcatcagaaatagcagggttcgtgtgaaagataca
actttttcttcaagacagtatggtacaagggaaagtaaagaagttactttggaagggaga
gttcagtttgatttacttcaggctatgcaaagagattataagttaagctcatactcactg
aattctgtttcagcacactttcttaatgagcagaaagaggatgttcatcattcaattata
tctgatcttcagaatggaaacccagagacaagacgaagattagctgtatattgtcttaag
gatgcttatctccctcaacggctgttggacaagttgatgtacatttacaattatgtggaa
atggctcgagtcacgggtgttccaatatcatttctcctttctagaggacagagtatcaag
gtgctgtctcaacttctaaggaaagcaaaacaaaagaatctcgtgcttcctaatgtgaaa
caagcaggatctgaacaagggacatatgaaggtgcaactgttttggaagccagagcagga
ttctatgagaagccaattgcaacattggattttgcatctctatatccctcaatcatgatg
gcatataacttatgctactgcactctagtgacttctgaagatgccaagaagctcaacctt
ccaccagaatgcgtcaataaaactccatcgggtgaaacatttgtgaagtcagatttacag
aagggtatacttcctgagattcttgaagaactgttggctgctcgtagaagagctaaagca
gatttgaaagaagcaaaagaccccctagtgaaagctgtgttggatggtcgccagctggct
ttgaagataagtgcaaattcagtgtatggatttacaggggctaccattggccagttacca
tgtttagagatatcttctagtgttacaagctatgggcgacagatgattgaacatacaaaa
aaactagtagaagataaattcacaacacttgcaggatatgaacataatgctgaggtcata
tatggggatacagattcagtcatggtacaatttggtgtcccaactgtggatgaagccatg
aaactgggtagagaagctgctgattacatcagtgccactttcatcaagcctatcaaactt
gagtttgaaaaggtttatttcccatatctactgatcagtaaaaagagatatgctggtctt
tactggacaaatccagacaaatttgacaagatggatacaaaaggtattgaaacagttaga
agggacaactgtttgttagtaaaaaacctggtgactgagtgccttcataaaatactaata
gacagagatgtgcctggagctgttcagtttgtgaaggatactatttcagatttacttatg
aatcgcatggatttgtctcttttggttattaccaagggattgacaaaaacaggagaggat
tatgaagttaaggcagcacatgttgaacttgcagagcgaatgagaaagagggatgcagct
actgctccaaatgtaggtgatcgtgtgccatatgtgattattaaaggtgccaaaagtgcc
aaggcgtatgagaagtcagaggacccaatatttgtgttggaaaataatataccgattgat
catgggtactaccttgaaaatcaaataaagaagccacttctgagaatttttgaacccatt
ttgaagaatgctagcagtgaactttttcatggaagccataccagatctatttctatctct
acaccatcaaatagtggcataatgaagtttgcaaagaagcaattaagttgtcttggatgc
aaagctaaaatcagtggtacagatgaaacactttgctcgcattgcaaggaaagggaagct
gagttttattgcaaaagcgtagctagtgtatctgagttagagaagctgtttgggaagcta
tggacacagtgccaggagtgccaagggtctcttcatcaagatgttttatgcacaagccgg
gattgcccgatattttacaggaggaaaaaagctcagaaagacatggcagaagccaaagtc
caattagaacgatggaacttctga
DBGET
integrated database retrieval system
