KEGG   Lactuca sativa (garden lettuce): 111898036
Entry
111898036         CDS       T05352                                 
Name
(RefSeq) splicing factor U2af small subunit B
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111898036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111898036
Spliceosome [BR:lsv03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111898036
 Complex B
    111898036
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 111898036
NCBI-ProteinID: XP_023749746
LinkDB
Position
2:complement(52154559..52158794)
AA seq 311 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDSITP
GVDPQGQPLDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE
HAANALQNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
RRQLFGRSRRRRSRSRSRSHSPHRHRGYDERGSRSSGRRAASGDYTDSRRRHHSRSPGRR
GGGRSRSPGGKRNRSPVREGSAERRAKIEQWNREREQANSRPKTTTDNNSNEQNGDEYYD
PRQQPHQQYDD
NT seq 936 nt   +upstreamnt  +downstreamnt
atggcggagcatttggcgtcaattttcggtacagaaaaggacagagtgaattgtccattc
tacttcaagatcggagcttgtcggcatggcgacagatgctcgaggcttcacaccaaaccc
agcatcagccccactctattgctttccaacatgtaccagcgtcctgattccatcactcca
ggtgttgatccccagggtcaaccccttgatcctcgcaaaatccaagatcacttcgaggat
ttctatgaagatttgtttgaagagctgagtaagtatggggagattgaaagcctaaacata
tgtgacaacttggctgaccacatggtggggaatgtgtatgtccagtttagggaagaagag
catgctgcaaatgctcttcaaaatctcactgggaggttttatgcagggcgtccaatcatt
gtggacttttctccagtgacagattttcgtgaagctacatgtaggcagtatgaagaaaat
gtatgcaatcgtggtggttattgcaacttcatgcatttaaaaaagatcagtagagagtta
aggagacaattatttggaagaagtcgaagaagaagaagcagaagccgaagccgaagccac
agtccccatcgccaccgtggctacgacgagcgcggtagccggagttccggaagaagggcg
gccagcggtgattacaccgactcccgccgccgccaccacagccgtagccccggtcgacgc
ggcggcggccggagcagaagccctggcggcaaacggaaccggagtccggtcagggaaggt
agtgcggaacgaagggcaaagattgaacaatggaatagggaaagagaacaagccaactcc
cgccctaaaaccaccactgataataatagtaatgaacaaaatggagatgagtattatgat
ccacgtcagcagccacatcagcaatatgatgactag

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