Lactuca sativa (garden lettuce): 111898305
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Entry
111898305 CDS
T05352
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111898305
03015 mRNA surveillance pathway
111898305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111898305
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111898305
5.6.2.5 RNA 5'-3' helicase
111898305
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111898305
mRNA cycle factors
Common to processing body (P body) and stress granule
111898305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
PIF1
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111898305
NCBI-ProteinID:
XP_023749987
LinkDB
All DBs
Position
6:complement(110720554..110732875)
Genome browser
AA seq
1275 aa
AA seq
DB search
MDSQPNNLYETASQPDTGNDDAYTFLEFNTQGEEDFNYPEFQELSQPNAVRSSPSSSVWP
TPSDSISVDTSAAVDHRSDSNASPGSETSGKGGGGRGNNNVNQASAVDALAAGMSGLNFE
ETGDDESYEYGKGDFMEHACKYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLV
RAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKD
MNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARHISAQQINKVEELWKTNPDATLEDLE
KPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKR
IAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVP
VDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEFQMVRNALPRR
FGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP
SNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQL
KDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQ
STEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVMLSVKPIRLQV
QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISAS
GTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKE
IEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLS
KQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGISANDNFG
SAAAAASGNPGGDGRNSRSRGVTGPYMGGGGAGNGSHKGSLHPAAYPMPRVPLPPYHGGP
QPYAIPTRGGGVHGPVGAVPHVPQPGSRGFTAGRGNAGGPIGSHLSHQHQQQQQPIGGSN
FNNFPSLENPTSQSSVAGGPLSQPGYVSNMTQGPAQTFRDGFSVGGMSQDFLGDDFKSQG
SHVAYNVAEFSTQASQGGYTVDYGNPATQGGFPGSYLNQNSQAGYSRFGTGNDFMSQDYM
GMGGHGSQGLFTQVGFTDPSQDENHFGVAPTNSLQTQNMMNPLYSQPFGHYNSQPVNMQQ
PPPPPQGQGQGHYNG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacccaacaacttatacgaaacggcgtctcagcccgataccggcaacgat
gacgcctacacgttcctggaattcaacacgcaaggcgaagaagacttcaattacccggag
tttcaagagctctcacagcccaatgccgttcgatcttcaccctcgtcgtcagtatggccc
acaccgtccgactctatatccgtcgacacctccgccgccgtcgaccaccgctctgacagc
aacgcctcccctggttcggaaacttcgggaaaaggtggtggtggtagggggaataataat
gttaatcaggcgtcggcggtcgatgcccttgctgcggggatgagcggattgaattttgaa
gagactggggatgatgagagttatgagtatggtaagggggactttatggagcatgcttgt
aagtattgcggggtgcagaatccggcgtgtgtcgtcaggtgtaacgtgccatcttgtcgg
aaatggttctgtaattcaagggggaacacttctggttctcacattgttaaccatctggtt
cgagctaaacataaagaagtgtgccttcataaagacagtcctttgggagaaacaattctt
gaatgctataactgcggatgtcgaaatgttttccttctgggatttatttcagccaagacc
gagagtgtggttgttctactttgcagggaaccatgtctaaatgtgaatgcactcaaagac
atgaattgggacttgagtcagtggtgtccacttatcgatgatagatgtttcttgcagtgg
cttgttaaggttccatctgaacaggagcagcttcgggcacgtcatatcagtgctcagcag
attaataaggtggaagaactttggaagacaaatcctgatgctaccttggaggatcttgag
aagcctggtgtagatgatgaaccccagcctgtagccttgaaatatgaagatgcctatcag
tatcaaaatgtgtttgccccactcatcaaacttgaagctgattatgataaaatgatgaaa
gaatctcaaagcaaagacaacctgacgattcggtgggatattggtcttaacaagaagcgt
attgcatattttgttttcccgaaggaagataatgaattacgtcttgtacctggcgatgag
ttacggctgcggtactctggggatgctgctcatccagcttggcagtcagttggacatgtg
ataaaactcactgcacaagaggaggtggctcttgagcttcgtgcgagtcagggagtacct
gttgatgtgaaccatggttttagtgttgactttgtgtggaagagcacaagttttgacagg
atgcagggtgcaatgaaaacctttgcagtggatgaaacaagtgtcagcgggtatatttac
catcatttgttaggccatgaggttgagtttcaaatggtgcgcaatgcattgccccgccgt
ttcggtgcacctggtcttccggagcttaatgcatctcaagtttttgctgtaaaaagtgtc
ctccagaaaccaataagcctgattcaagggccaccgggcactgggaaaacagtcacttct
gcagcaattgtttatcacatggccaaacaaggtcaaggacaggttctggtttgtgcacct
agcaatgtggctgtagatcaacttgcagagaagataagtgccactggcttaaaggttgta
cgactgtgtgctaaatcaagggaagctgttagttcacccgttgagcatttaaccctccac
tatcaggtccgtcatcttgatacatctgaaaagagtgaacttcacaagctgcaacaattg
aaagatgaacaaggggaattgtccagcagtgacgagaaaaagtataaagcactgaagcgc
gctacagaacgagagatatctcagagtgctgatgtcatctgttgcacatgtgttggtgcc
ggagatcctcggttggccaattttagattccgtcaggtgcttattgacgaatctactcaa
tcaactgagcctgagtgtcttattcctcttgttcttggggcaaagcaggttgttcttgtt
ggtgaccattgtcagctcggtccggttatcatgtgcaaaaaagcagctcgtgcagggtta
gctcaatcgctatttgagcggcttgtgatgcttagtgtcaaaccaattagattgcaggtt
cagtatcggatgcatccatcactttcagagtttccttccaatagtttttacgaaggtacc
ctccaaaatggagtgacaatcaatgagaggcaatcaccaggaatcgattttccctggcct
gtgccaaaccgtcctatgttcttttatgtccagatgggacaagaagaaattagtgctagt
ggaacatcctatcttaacaggactgaggctgcaaatgttgaaaaaatagtcaccactttc
ttaaggagtggtgtagttccaagtcagataggggttataacaccgtatgaagggcagcgt
gcatacattgttaactacatgtcaagaaatggtgcacttaggcaacaactttacaaggaa
attgaggttgcaagtgtcgattcgtttcaaggacgggaaaaagactacatcattttgtca
tgtgtgagaagtaatgaacatcagggtattggatttcttaatgatccacgcaggcttaat
gttgcacttacacgtgctcgttatggtattgtcattcttggaaatccaaaagttcttagt
aaacaaccattatggaatggtttactcacacattataaggagcatgaatgtttagtggaa
ggccctttgaacaacttaaagcagagtatggtgcaatttcagaagccaaagaagatatac
aacgacaggaggcttttctttggtggtggacctggtatttcagctaatgataactttggt
tctgctgctgctgctgcttcaggaaatcctggtggcgatggaagaaacagtcgttccagg
ggtgttacaggtccatacatggggggaggtggagcaggtaatgggagtcataaaggtagt
cttcatcctgctgcatacccaatgccccgtgtgcctcttccaccatatcatggtggtccg
cagccgtatgctattccaacccgtggaggtggagtacatggaccggttggcgctgttcct
catgttccgcagccaggtagtcgcgggttcactgctggtcgggggaatgctggtggtcct
attggcagccatctctcacaccaacaccagcagcagcaacaacctattgggggatctaat
ttcaacaacttcccttcactagaaaatccaacaagccagtcatcagtggccggtggtcca
ttatctcagcccggatatgtttctaatatgactcaagggccagcacaaacattccgtgat
ggcttctcggttggaggcatgtcacaggatttcttgggtgatgattttaaaagccaaggc
tcacatgtcgcttataatgttgctgaattttcaacgcaggcttctcaaggtggatatact
gttgactatggtaatccggctacccagggagggtttcctggaagctacttaaaccagaat
tctcaagctggatattctcgttttggtacagggaacgattttatgtctcaggactacatg
gggatgggggggcatggttctcaagggttgtttacacaagtagggttcactgatccatca
caagatgaaaaccactttggtgtggcccccaccaattctcttcagacacagaatatgatg
aatccactctactcgcagccatttggtcactataactctcaacctgtaaacatgcagcaa
cctcctcctcctcctcaagggcaagggcagggacactacaatggttga
DBGET
integrated database retrieval system
