Lactuca sativa (garden lettuce): 111898378
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Entry
111898378 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111898378
09122 Translation
03013 Nucleocytoplasmic transport
111898378
03015 mRNA surveillance pathway
111898378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111898378
03041 Spliceosome [BR:
lsv03041
]
111898378
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111898378
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111898378
Spliceosome [BR:
lsv03041
]
Complex C
Other components
EJC/TREX
111898378
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111898378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
111898378
NCBI-ProteinID:
XP_023750066
LinkDB
All DBs
Position
5:complement(71978046..71981977)
Genome browser
AA seq
430 aa
AA seq
DB search
MGETEMKDTDAYEEELLDYEEEDEKAPDSAGVKVNGEAVKKGYVGIHSSGFRDFLLKPEL
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
LVLCHTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRI
LALARDKDLALKSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS
VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV
NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPE
QIDTSTYMPS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacagagatgaaggatactgacgcttacgaggaggagcttctcgactacgaa
gaggaggacgagaaggcccctgattcagccggtgttaaagtcaacggcgaagccgttaag
aagggctatgtaggaattcacagttccggatttagagattttcttttgaagccagagcta
cttcgtgctattgtggattcaggatttgaacatccttccgaagtgcaacacgaatgcatc
cctcaagctattttgggcatggatgtcatttgccaagcaaaatctggtatgggaaaaact
gctgtttttgtcctttcaaccctgcaacaaattgagcctgtagctggtcaagtagctgcc
cttgttttatgtcacacaagagaattagcttatcagatctgccatgagtttgaaagattc
agcacttatttaactgatatcaaggtagctgtcttttatggtggtgtcaacatcaagatt
cacaaggagcttctcaaaaatgaatgccctcatattgttgttgggacacctggaaggatt
cttgcacttgctagggacaaagatcttgctttgaagagtgtgaggcattttatacttgat
gaatgtgacaagatgcttgagtcactcgacatgaggagagatgtgcaagaaattttcaag
atgacaccacatgacaaacaagtaatgatgttttcagcaactttaagcaaggagattcga
ccagtctgcaaaaagttcatgcaagatccaatggaaatttatgtggatgatgaagccaag
ttgactcttcatggtcttgtacagcactacatcaaattgagtgagctggagaagaatcga
aagctgaatgatctgctggatgcgttagatttcaatcaggttgtgatatttgtgaaaagt
gtaagcagagcagctgagctcaacaagttgcttgtggaatgtaactttccatcaatctgc
atccactctggcatgtctcaggaagaaaggttgactcgttacaagggcttcaaggaagga
cacaagagaatcttggtggcaactgatttagttggaaggggtattgatattgaacgtgta
aacattgtcataaactatgacatgccagattctgctgacacttatctccaccgtgtgggt
agagctggaaggttcggaacaaaaggtcttgccatcacttttgtgtcatctgcagccgac
tctgatgttcttaaccaggttcaggagagatttgaggttgatatcaaagagcttcctgag
cagattgatacgtcaacatatatgccatcgtag
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