Lactuca sativa (garden lettuce): 111899630
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Entry
111899630 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI3
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111899630
03083 Polycomb repressive complex
111899630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111899630
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111899630
Histone modification proteins
HAT complexes
HATB complex
111899630
HDAC complexes
Sin3A-HDAC complex
111899630
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111899630
PRC2.2
111899630
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111899630
Heterochromatin formation proteins
Other heterochromatin formation proteins
111899630
Chromatin remodeling factors
NuRD complex
111899630
NuRF complex
111899630
NuRF complex (fruit fly)
111899630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_HPS5
WD_LRWD1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
MIOS_WD40
Beta-prop_EML
WD40_RFWD3
Beta-prop_NUP159_NUP214
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
111899630
NCBI-ProteinID:
XP_023751240
LinkDB
All DBs
Position
4:121195652..121197862
Genome browser
AA seq
405 aa
AA seq
DB search
MRTEEDDGAGAGAGEDHQVEEEFSVWKKNSPFLYDLIVSHSLEWPSLTVQWLPSPPSPYK
DGSFATHKLILGTHTSDESPNFLLVADVLLPVNPSSSLDTNHENPHIPKVEIIQKIHVDG
EVNRARCMPQNPSIIAAKTSSSEVYVFDSTKQLLNDEGGSCEPDAKLRGHEKEGYGLSWS
PFKEGYLLSGSNDCKICLWDVSAMPSNKVLDAKYIYEDHGSLVEDVSWHLKNESLFGSVG
DDCKLMIWDLRTNKHEQSVVVHEKEVNYLSFNPFNEWVLATASSDTTVGLFDMRKLTSPL
HVLSSHTEEVFQVEWDPNHETVIASSADDRRLMVWDLNRIGDEQLEGETEDGPPELLFSH
GGHKAKISDFSWNKNEPWVISSVAEDNALQVWQMAESIYHEDDGI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaggacggaggaagacgatggcgccggcgccggcgccggcgaagatcaccaagtggag
gaggagttcagtgtatggaagaagaactctccattcttatacgatctcatcgtctctcac
tcccttgagtggccgtcactaaccgttcagtggctcccgtcaccgccgtctccttacaaa
gacggctctttcgccactcacaagctgattctcgggacgcatacctccgatgaaagtcct
aacttccttctcgtcgcagatgtcctcttgccggttaatccttcatcttccctcgacacc
aatcacgaaaaccctcatatccctaaggtagagataattcaaaagattcatgttgatgga
gaagtaaatcgggcacgatgtatgccacaaaacccatcaattattgcagcaaagacaagt
tcttctgaagtctatgtatttgattccacaaaacaacttttaaatgatgaaggaggctct
tgtgaacctgatgcaaagttaaggggtcatgaaaaagaaggttatgggctttcatggagc
ccttttaaagaagggtatctcttgagtggctctaatgattgtaaaatatgtttatgggat
gtgtctgcaatgccttcaaataaagttcttgatgccaaatacatttatgaggatcatggg
agtttagttgaagatgtatcatggcatttgaagaatgaaagcttatttggatctgttggg
gatgattgtaagctaatgatttgggatttacgcacaaataaacatgaacaatctgttgta
gttcatgagaaagaggtgaattatttatcttttaatccattcaatgagtgggttttggct
acagcatcttcagatacaacagttgggcttttcgacatgaggaaactaacatcaccactt
catgttttgagtagtcatacggaggaggtattccaagttgagtgggacccaaaccatgaa
actgtgattgcatcttctgctgatgacagaaggctgatggtgtgggacctaaacaggatt
ggagatgaacagctggaaggtgaaactgaagatggcccaccagagcttttgttctctcat
ggtggacacaaggcaaaaatatcagacttttcatggaacaaaaatgagccatgggtgatt
tctagtgtggctgaagataatgcgttgcaggtttggcaaatggctgaaagtatttatcat
gaagatgatggcatttaa
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integrated database retrieval system
