KEGG   Lactuca sativa (garden lettuce): 111899774
Entry
111899774         CDS       T05352                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03030  DNA replication
lsv03410  Base excision repair
lsv03420  Nucleotide excision repair
lsv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111899774
   03410 Base excision repair
    111899774
   03420 Nucleotide excision repair
    111899774
   03430 Mismatch repair
    111899774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lsv03032]
    111899774
   03036 Chromosome and associated proteins [BR:lsv03036]
    111899774
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111899774
DNA replication proteins [BR:lsv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111899774
  DNA Replication Termination Factors
   ELG1-RFC complex
    111899774
Chromosome and associated proteins [BR:lsv03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111899774
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111899774
  Check point factors
   HRAD17(Rad24)-RFC complex
    111899774
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 AAA_22 Sigma54_activ_2 DUF815 AAA_5 RuvB_N Mg_chelatase RsgA_GTPase AAA_29 ABC_tran AAA_23 AAA_2 AAA_16 nSTAND3 POC1 AAA_24 T2SSE TsaE AAA_30 nSTAND1
Other DBs
NCBI-GeneID: 111899774
NCBI-ProteinID: XP_023751388
LinkDB
Position
2:complement(197479797..197482472)
AA seq 354 aa
MLWVDKYRPKSLDKVLVHEDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG
ASAEKVKVENKTWKVDAGSRTIDLELTTLSSSHHVELNPSDAGFQDRYIVQEIIKEMAKN
RPIDVKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCDSSSKVTEAVRSR
CLNVRISAPKEDQIVKVLEFIGKKEGLQLPPGFAARIAEKSGRSLRRAILSFETCRVQQY
PFTNNQVIPPMDWEEYVSEIAADIMKEQSPKRLFQVRGKLYELLVNCIPPEVILKRLLHE
LLKKLDSELKHEVCHWAAYYEHSMRLGQKAIFHIEAFVAKFMSIYKGFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctttgggtggacaaatacagaccaaaatctctggacaaggttcttgtacacgaagat
gtcgctcaaaatctcaagaaattggtcaccgagcaggattgcccacatttactcttctat
ggcccatcgggttccgggaagaaaaccctaattatggcccttctcaggcagatgtttggg
gctagtgccgagaaggtgaaagtggagaacaaaacctggaaagttgatgccggaagtaga
actattgatttggaactcacgactctttcaagctcccaccatgtggagctgaacccaagt
gatgctgggttccaggataggtacattgttcaagaaatcattaaagaaatggcaaagaac
agaccaattgacgttaaaggaaagaagggtttcaaagtattagtactcaatgaggttgat
aaactttcaagagaagcacaacactctctaagaagaacaatggagaagtatagtgcctcc
tgtcgtttgatcctatgctgtgacagctcatcaaaggttactgaagctgttcgctctcga
tgtcttaatgtgcgaataagtgcaccaaaagaagaccagattgttaaggttctggaattt
attggcaaaaaggaggggttacaacttcctcctggatttgctgctcgcatagcagaaaaa
tctggtcggagtttaaggagggctatattgtcatttgagacatgtcgtgtccagcagtac
ccttttactaataatcaagtaattcccccaatggactgggaagaatatgtatctgagata
gcagctgacattatgaaagagcagagccctaaaaggttgttccaggttcgagggaagttg
tatgagttacttgtgaattgtatccctcctgaagttatattgaagagactgcttcatgaa
ttgctgaagaaactagattctgagttgaagcatgaggtctgtcattgggcagcatattat
gaacatagtatgcgccttggacagaaagccatatttcacattgaagcatttgtggctaag
ttcatgagcatctacaaaggcttcctaattgcgacatttggctga

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