Lactuca sativa (garden lettuce): 111900051
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Entry
111900051 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111900051
03083 Polycomb repressive complex
111900051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111900051
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111900051
Histone modification proteins
HAT complexes
HATB complex
111900051
HDAC complexes
Sin3A-HDAC complex
111900051
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111900051
PRC2.2
111900051
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111900051
Heterochromatin formation proteins
Other heterochromatin formation proteins
111900051
Chromatin remodeling factors
NuRD complex
111900051
NuRF complex
111900051
NuRF complex (fruit fly)
111900051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
EIF3I
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
eIF2A
WD40_RFWD3
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
111900051
NCBI-ProteinID:
XP_023751692
LinkDB
All DBs
Position
1:complement(43961441..43964744)
Genome browser
AA seq
455 aa
AA seq
DB search
MKESAGKVGGGLPSVDARYTQWKYLVPILYDWLANHNLLWPSLSCRWGPQIEQATYKNRQ
RLYLSEQTDGSVPNTLVIANCEIVKPRVAAAEHISQFHEEARSPYVKKFKTIIHPGEVNR
IRELPQNMNIVATHTDSPDVLIWDVEAQPNRHAVLGATESRPDLILTGHQENAEFALDMC
RSAPFVLSGGKDKSVVLWSIHDHISTLATKTGGTNDKPSESPVIQARGVFQGHEDTVEDV
QFCPSSEQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWNPIDENLILTGSA
DNTIRLFDRRNLTNNGVGSPIHIFQNHTAAVLCVQWSPDKSSVFGSSAEDGVLNIWDHNK
IGERSGEASKGLLFRHSGHRDKVVDFHWNAHDPWTIVSVSDDDETTGGGGTLQIWRMIDL
IYRPQQEVITELDKFRSHILTCSSQSHQDLTNQNS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagagtgccggcaaagtcggaggagggctgccgtcggtcgacgcacgctacaca
cagtggaagtatctcgtccccattctctacgactggctcgccaaccacaaccttctttgg
ccgtctctttcttgccgatgggggccacagatagagcaagctacatacaagaatcgccaa
cgactgtacctctcagaacagacagatggtagtgttccaaacacacttgtgatagcaaat
tgtgaaattgtcaaacctagagtagcagcagcagaacacatatcacagttccatgaagaa
gcacgatcaccctatgttaagaagttcaaaaccatcatacatcccggagaggtcaatcgc
atcagggagcttcctcagaacatgaatatagtagccacacacacagacagtcctgatgtt
cttatctgggatgttgaagctcagcctaatcgccatgctgttttgggagctacagagtct
cgtcctgatttgattttgacaggtcatcaagaaaatgcagaatttgctcttgacatgtgc
cgaagtgcaccctttgtactttctggaggtaaggataagtcagttgtgttgtggagtatt
catgatcatatttctactttggcaacaaagactggtgggaccaatgataaacctagtgaa
agccctgttattcaagcaagaggtgtgtttcaagggcatgaggacactgttgaagatgta
caattctgcccctctagtgaacaagagttctgtagtgttggtgatgattcttgtcttata
ctatgggatgcaagaacaggttcttctccagttgtaaaggttgagaaagcacacaatgct
gatcttcattgtgttgattggaaccccattgatgaaaaccttatactcactgggtctgct
gataacactattcggttgtttgatcgaagaaatctgactaataatggggttggatcaccc
atccacatattccaaaatcacactgctgctgttctttgtgtacagtggtccccggacaaa
tcatccgtgtttggcagttcagcagaagatggagtgttgaacatctgggatcataataag
attggcgaacgttctggtgaagcctcaaaaggtttattattccgccattctgggcacagg
gacaaagtagttgattttcactggaacgctcatgatccatggacaatcgttagcgtatct
gatgatgatgaaactactggtggcggtggaaccctacagatatggcggatgattgattta
atctatcgtcctcagcaggaggtgatcacggagttggataaattccgatctcacattctc
acttgctcttcacagtcacaccaggatttgactaatcagaactcataa
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