Lactuca sativa (garden lettuce): 111900052
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Entry
111900052 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111900052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111900052
03009 Ribosome biogenesis [BR:
lsv03009
]
111900052
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111900052
Spliceosome [BR:
lsv03041
]
Complex A
U1 snRNP components
U1 related factors
111900052
Complex B
111900052
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111900052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111900052
NCBI-ProteinID:
XP_042756303
LinkDB
All DBs
Position
1:complement(43906726..43909845)
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AA seq
507 aa
AA seq
DB search
MSRYDSRSGDPASYRDRRSDSGFSGGSGLGGYNSSSSKRDHESSDTQRKVDLEGLTPFEK
NFYVESPAVAKMSESEVEEYRTRREITVEGRDVPKPVKTFSDARFPDYVMQEIVKAGFTE
PTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAPT
RELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIIIATPGRLIDMLESHH
TNLRRVTYLVLDEADRMLDMGFEPQMKKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYN
PYKVVIGSQDLKANHSIQQHVDIVTENQKYNKLVKLLDDIMDGSRILIFMDTKKGCDQIT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILQEAGQKVNPDLAAMGRGA
PPPPSGHGGFRDRDRGRGYGGGRSSWN
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttatgacagccgttccggcgatcccgcttcatatcgcgaccgcagaagtgat
tcagggttcagcggaggttctggtcttggcgggtataattcttcatctagcaaaagggac
catgaaagttctgacactcagcgcaaggtggatttggaagggttgactcctttcgaaaag
aacttctacgtggagtctccagctgttgctaaaatgtctgaaagcgaggtagaagaatac
aggacacgaagagaaatcactgttgaaggtcgtgatgttcctaagcctgttaaaacattc
agcgatgcaagatttccagattatgttatgcaagaaatcgtgaaagcaggcttcacagag
cctactgcaattcaagctcaaggatggccaatggctttaaagggtcgtgatctcattgga
attgctgaaacaggatctggaaagactcttgcttatctattgcctgctattgtgcatgtt
aatgctcaaccaatcttatctccaggagatggaccgattgtgttagttttagctccaact
cgtgaacttgctgttcaaatacaacaagaagcaactaaatttggcgcatcttcaaagatt
aagaatacctgcatttatggtggggttccaaagggtcctcaagttcgtgatttacagaaa
ggtgttgagattatcattgctacacctggaagattgattgatatgttggagtctcatcat
acaaacctgaggagggtgacttaccttgtgttggatgaggcagataggatgcttgacatg
ggttttgaacctcaaatgaaaaaaattgtttcacagattcgaccagatcgtcaaaccttg
tattggagtgctacatggccaaaggaagttgagcaacttgcaagacagtttctttacaac
ccatacaaagtggtgattggttcacaagacttaaaagctaaccattcgattcaacaacat
gtggatattgttaccgagaatcaaaagtataacaaattggtgaaactgctggatgatatc
atggatgggagtagaattctaatttttatggacacgaaaaaagggtgtgaccaaatcacc
cgccagctcagaatggatgggtggcccgctttatcaattcatggagataaaagtcaagca
gaaagagattgggttttatccgaattcaaagctggtaaaagtccaataatgacagctaca
gacgttgcagctcgtggcttagatgtgaaggacgtgaaatatgtgataaattatgatttc
ccgggttctttggaagattatgttcataggattggaagaacaggaagagccggggctaaa
gggacagcatacactttttttacagcagcaaatgctcggtttgctaaggaactaattgcc
atacttcaggaggccggtcagaaagtcaaccctgatttagcggcaatggggcggggtgca
cctcctccaccatcaggccatggtggttttcgtgaccgtgatcgtgggcggggttatggc
ggtggtcgctcgtcttggaactga
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