Lactuca sativa (garden lettuce): 111900121
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Entry
111900121 CDS
T05352
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111900121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111900121
Enzymes [BR:
lsv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111900121
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111900121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111900121
NCBI-ProteinID:
XP_023751762
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All DBs
Position
8:153453475..153456862
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AA seq
614 aa
AA seq
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MPSFPMVWRRFLCTQTSNFSFFNQKPAAVRRPQWPIKQVTKSNFVDSLDEIKNHISESDF
VAVSLKNTGSYSSPWHRILPFDTAETAYLKAKYAAERFQILQFAVCPFSIRASNKLTAHP
FNFHLFPRDELKTGMPCYSFSCQPSYLASMARDDFDFNLCINDGISYLSRAQESAAKIQI
ENPVSNDYVTQSPSSRSVADNVFVERIKSKVGHWISACTRSDTRTDDALVNSLRKLILGG
EDYGSRPSLNIDVCSERQVQLVFEMVKSQYENVVPLTIPAKGGGTQSVRVVLTSSKEDRD
LFKTELQDIEEEQSKRIRGFREVIDLISASRKPVIAHNSLNDFAFIYSKFLSPLPSTMDE
FRSSLHSAFPDVLDINHLMKEVGPLSKYNNLPSAISYLKRNFFAPIEIEIPQKASIEENK
NHGHDAVRISELFAKLCSILKITHDNGPSSLKRHLNVFNQGSNGFLDEGDDISIWTHNPK
KISIDNLVFIWGFRGGISAGKLKNLLCNSHERLSEDDLFDVRLVDKNCAVVVFWKSGLSE
WFLAAIDSGEELRELAAEGFMGAGYEAYRRVCKFEVLGADLADSLAECRVLEGGEVESDE
VYWNSELMINFDDL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgccatcatttccaatggtgtggaggcgcttcctttgcacccagacatctaacttctct
ttcttcaaccaaaaacccgccgccgtccgccgtcctcaatggcctataaaacaggtcacc
aagtctaatttcgtagattcactcgacgaaattaagaaccacatatctgaatcagatttt
gtggcggtttcgttgaagaacactggttcttactcgtccccatggcatcgaattctgccc
ttcgacaccgctgaaaccgcatacctgaaggccaagtatgccgccgagaggtttcagatt
cttcagtttgctgtttgccccttttctattagggcttccaataagcttacagctcacccg
ttcaacttccatttgttcccgagggatgaactgaaaacagggatgccctgttacagtttt
tcatgtcaaccatcgtatttagcttcaatggctcgagatgattttgacttcaatctctgc
ataaatgatggtatatcttacttgtccagagcacaagaatcagcagcaaaaattcaaatc
gagaatccagtttcaaatgattacgtgacccagtctccttcatctcgttcagttgcagat
aatgtatttgttgaaaggattaaatctaaagttggacactggataagtgcttgtacacgc
tcagatacaagaactgatgatgctttagttaattctctcaggaaacttatcttaggaggt
gaagattatggatcaagaccttctttgaatatagatgtttgcagtgaacgtcaagtgcaa
cttgtatttgagatggtgaaatcccagtatgaaaatgttgtgccattaacaattcctgca
aaaggaggaggaacccaatctgttcgagttgttttaacaagttcaaaagaagatagagat
ctttttaagacagagcttcaagatatagaagaggaacaaagcaagcgaattcgtggcttt
cgggaggtgatcgatttgatttctgcttctcggaaacccgtcattgctcacaactccctt
aatgattttgcatttatttattccaaattcttgtctccactcccatccacaatggatgaa
tttagaagctcattgcactcggctttccctgatgtacttgacatcaatcatctaatgaag
gaagtgggccctctaagtaaatacaacaatttaccttcagctatttcctacttgaaaaga
aacttttttgcacctatagaaatcgaaatacctcaaaaagctagcatagaggaaaacaag
aaccatggtcatgatgctgtgagaataagcgaattatttgctaaactatgctctatccta
aaaatcacccacgataacgggccttcatcacttaaacgccacttaaatgtgttcaaccag
ggctctaatggcttcctagatgagggtgatgacatcagtatatggactcataatcccaaa
aaaatcagcatcgacaatctagtatttatatggggtttcagaggcggcatatccgccgga
aagttaaagaacttgctttgtaattcccacgaaaggttatcggaagatgatctttttgat
gtccgattagtggacaagaattgtgcggttgttgtgttttggaaaagtggactgtcagag
tggtttcttgccgccattgattccggtgaggagctccgggaactggcggcggaagggttc
atgggggcaggctatgaagcttatagaagggtctgtaaatttgaggttttaggggcagat
ttggcggattcgttagcggagtgtagggtattggagggtggtgaggtggagtctgatgag
gtgtattggaacagtgagctgatgattaattttgatgatctttga
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