Lactuca sativa (garden lettuce): 111900249
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Entry
111900249 CDS
T05352
Name
(RefSeq) polyadenylate-binding protein 2
KO
K13126
polyadenylate-binding protein
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111900249
09123 Folding, sorting and degradation
03018 RNA degradation
111900249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111900249
03041 Spliceosome [BR:
lsv03041
]
111900249
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111900249
mRNA cycle factors
Stress granule specific factors
111900249
Spliceosome [BR:
lsv03041
]
Complex C
Other components
Complex C specific factors
111900249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_7
RRM_Nup35
SET_assoc
RBD_DGKtheta
PABC_AtC3H46
DUF2777
HPS3_C
Motif
Other DBs
NCBI-GeneID:
111900249
NCBI-ProteinID:
XP_023751896
LinkDB
All DBs
Position
7:156827397..156830687
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AA seq
654 aa
AA seq
DB search
MAAQVQVQPQAVSAGVGGAAPAGAQQFVPTSLYVGDLEWNVTDSQLYDLFNQLGQVVSVR
VCRDLSTRRSLGYGYVNYANPQDAARAMEVLNFTPLNGKAIRIMYSHRDPSVRKSGSGNI
FIKNLDKAIDQKALHDTFSTFGNILSCKIATDSTGQSKGYGFVQYDAEESAQKAIEKLNG
MLLNDKQVYVGPFLRKQERELAVDKTKFTNVYVKNLSESTTDDDLNKTFSEFGTVTSAVV
MRDAEGNSKCFGFVNFENAEDAGKAVEGLNGQKFDNKEWYVGKAQKKYEREQELKQRFEQ
TMKEAVDKSQGLNLYIKNLDDTIDDENLKELFSSYGTITSCKVMRDPNGTSKGSGFVAFS
TSEEASRALFEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPIAMAPAVAPRMPMY
PPGGPGLGQQIFYGQAQPTFIPPQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQR
PGGRRATGPGQQNQQPVPLMQQQMMPRGRMYRYPPGRNVPDGSMTGIGGGGMVSVPYDMG
GMALRDTGITQPIPIGALASALANASPTEQRTMLGESLYPLVEQLEPESAAKVTGMLLEM
DQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQAAAGGAASQLAGLSLNDGIVS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggttcaagttcaacctcaggcggtgagtgctggtgtcggtggtgctgct
cctgctggtgctcagcagtttgtgccgacctcattgtatgttggggatctggagtggaat
gtgacggattcgcagttgtatgatctgtttaaccagttaggtcaagtggtttctgttcga
gtttgcagggacttgtcgactcgacgatcgcttggttatggctatgtcaactatgcgaat
cctcaagatgctgcaagggcaatggaggtgctgaacttcacacctttgaatgggaaggcg
atcagaataatgtattctcatcgagaccctagcgtacgcaaaagtggctctggaaacata
tttatcaagaatctcgataaggcaatcgaccaaaaggccttacacgacacattctctaca
tttggcaatatcctctcctgcaagattgcgacagattcaactggccaatcaaagggttac
ggttttgtacaatacgacgctgaagaatctgcacaaaaagccattgaaaaactcaatggc
atgcttttaaacgacaaacaagtctacgtgggaccttttttgcgcaaacaagaaagagaa
ctagctgtcgacaagacaaagtttactaatgtctatgtcaaaaacctttctgaatcaaca
acagatgatgatctaaacaagacatttagtgaatttggaactgtgacaagtgctgttgtg
atgagggatgctgaagggaactccaaatgctttggatttgttaattttgagaatgctgag
gatgctggtaaagcagtggaagggcttaatggtcagaaatttgataacaaagaatggtat
gttggaaaagcacagaagaaatacgaaagggaacaggaattgaagcaaagatttgaacag
actatgaaggaggcagttgataaatcacaagggttaaatttgtacataaaaaatctagat
gataccattgatgatgaaaacctcaaggagttattttcttcttatggtactataacttct
tgcaaggttatgcgagatcctaatggaacaagcaaaggttcaggttttgttgccttttct
acttctgaagaagcttctagagcactttttgagatgaatggaaagatggttgcaagtaag
ccactttatgtggcacttgcacaacgtaaggaagacagaagggcaagattgcaggcacag
ttttcacagatgcgcccaattgcaatggcgccagctgtagcaccacgtatgccaatgtat
ccacctggtgggccaggtttaggtcaacagatattctatggtcaagctcagcctacattc
attcctccacagcctggatttgggtatcaacagcaacttgtgccaggtatgcgtccaggt
ggcgccccaatgccaaacttcttcatgccaatggtgcagcaaggtcaacaaggtcaacgc
ccaggtggcaggcgcgctactggtccaggtcagcaaaaccagcagcccgttcccctaatg
cagcaacagatgatgccacgtgggaggatgtaccgttacccccctggacggaatgttccg
gatggttccatgaccggaattggaggtgggggaatggtttctgttccgtatgacatgggt
ggaatggcattgagagacactggaatcacacaacccattccgattggtgcgttggcttct
gcacttgctaatgcttcccccacagaacagagaacgatgttgggagagagtctgtaccca
ttggtggaacagttggagcctgaatcagcagcaaaggtgactgggatgcttttggagatg
gatcaaactgaggttcttcatttgctggagtcgccggaggctttgaaagcaaaggtggcg
gaggccatggaggtgttgaggaatgtgtctcagcagcaggcggcagctggtggtgccgcc
agtcaactggcgggtctgtctttgaatgatgggattgtttcttaa
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