Lactuca sativa (garden lettuce): 111900392
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Entry
111900392 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111900392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111900392
03036 Chromosome and associated proteins [BR:
lsv03036
]
111900392
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111900392
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111900392
mRNA degradation factors
5'-3' decay
Decapping complex
111900392
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111900392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
111900392
NCBI-ProteinID:
XP_023752045
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All DBs
Position
6:10000627..10003801
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AA seq
516 aa
AA seq
DB search
MNDSTGNNSYNRRYPPGIGNGRGGGGGWYGGGGGGGGNFQTNPNYHHQPRSHDQIQQQQH
QSQYSQRQQSTQQHYNQKQQWLRTNPNVPVSSTANNNNYEVEKTVQSEGSVDSSSQDWKA
QLNIPAADSRFKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGS
DILARAKNGTGKTAAFCIPALEKIDTDNNVIQVIILVPTRELALQTSQVCKELGKHLQIQ
VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCILNDCAMLVLDEADKLLSPE
FQPSVEHLISFLPQNRQILMFSATFPVTVKDFRDRYLKNPYVVNLMDELTLKGITQYYAF
VEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNR
VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRVGRSGRFGHLGLAV
NLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatagcaccggtaacaacagttacaaccgccggtaccctcctggtatcggaaat
ggccgcggcggcggaggaggatggtatggcggtggtggaggtggaggtggtaattttcaa
acaaaccctaattatcaccatcaacctcgtagccacgatcaaattcaacagcagcagcat
cagtcacagtactcgcagagacagcagtccacacaacaacactacaatcagaaacagcag
tggctaagaacgaaccctaatgtccctgtttcttctactgccaataacaataactatgaa
gtcgagaaaaccgtacagtcagaaggcagcgttgattcaagctctcaagattggaaagca
cagttaaacatacctgcagcagatagccgtttcaagactgaggatgtaacagctacaaaa
ggaaacgaatttgaggactactttctaaaaagagaactacttatgggaatctatgagaag
ggttttgaaaggccttctcctatacaagaagaaagcatccctattgctttaactggtagt
gatattcttgctagagccaaaaatggaactggaaaaacagccgctttttgtattcctgct
cttgaaaagatcgatacagacaacaatgtcatccaagttatcatacttgtccccacaaga
gaacttgctcttcaaacatcacaggtctgcaaggagcttggaaaacacttacagattcaa
gtaatggtgacaactggaggaacaagtctaaaagatgacatcatgcgattatatcaacct
gttcatttgttagttggaactcctggaagaattcttgatctaaccaaaaagggtgtctgt
attctcaatgactgtgcaatgctggtattggatgaggctgataagctgttgtcccctgag
tttcaaccttctgtagagcatctgatcagtttccttccacaaaacagacagattttgatg
ttttcagctacatttcctgttactgtaaaagatttcagagacagatacctgaaaaatcct
tatgttgttaatttaatggacgaacttacccttaaaggtatcacacagtattatgctttt
gtggaagaaagacaaaaggttcactgcctcaacactcttttctcaaagttacaaatcaac
caatctatcatattctgcaactctgtaaaccgagtagagctgttagcaaagaagataaca
gagcttggatattcttgcttttatattcatgctaaaatgctgcaagatcatcgtaatcgt
gtcttccatgatttccgcaatggtgcatgcagaaatcttgtttgtactgatttgtttaca
aggggtatagatattcaagccgtgaatgttgtcatcaattttgactttccaaggaatgcg
gagacgtatttgcacagggttggacgttcgggaaggtttggacatctggggttggctgtg
aatttgataacttatgaagaccggtttaacttgtataggattgaacaagaacttggaact
gagattaaacaaattcctccccaaattgatcaagccatttactgtctgtga
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