Lactuca sativa (garden lettuce): 111900559
Help
Entry
111900559 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111900559
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111900559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111900559
03041 Spliceosome [BR:
lsv03041
]
111900559
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111900559
Spliceosome [BR:
lsv03041
]
Complex B
Other components
Prp19-related factors
111900559
Complex C
111900559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
111900559
NCBI-ProteinID:
XP_023752205
LinkDB
All DBs
Position
1:complement(171318673..171323587)
Genome browser
AA seq
920 aa
AA seq
DB search
MSIPSELYPSQDDLLYEEELLRNPFSLKLWWRYLIARTESPFKKRAVIYERALKALPGSY
KLWHAYLRERLELVRNLPISHAQYQTLNNTFERALVTMHKMPRIWIMYLTSLTEQKLVTR
TRRTFDRALCALPVTQHERIWEPYLVFVSQRGVPIETSLRVYRRYLKYDPGHIENLIEFL
LNSRLWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRQLLEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESVL
ALRMETMTESEDEEEDGETENGIEDEDEEDDRLDVGKLEEKLKKFWISDYKDVNLRIARF
EHLMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPMKAVGKP
HTLWVAFAKLYESHKDIGNARVIFDKAVQVNYKAVDNLASVWCEWAEMELRHKNFKGALE
LMRRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERIL
DLRIATPQIIINYAMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKS
KLERARELFEHAVEMAPAEVVKPLYIQYAKLEEDYGLAKRAMRVYDQGTKAVPSNEKLSM
YEIYIARAAEIFGVPKTREIYEQAIVSDGLPEKDAMKMCIKYAELEKSLGEIDRARKIYV
YASWLADPRSDGDFWNKWHEFEVQHGNEDTFRDMLRIKRSVSARHSQTHVMLPEYLMQKP
TVDEAMDALKKAGVPEDEMAALERQLAPAAPKTTTTTTTTLDSGNRKLGFVSGGVQSSET
ASGIQNQEEIELPESDDDDDDDDDGKVEISQKDVPEAVFGGLVRKRDEEEEEQVKKDNEN
GDAGSRLGALERIKRMRQGN
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattccgagcgaattgtatcctagccaagacgatcttctgtacgaggaagagctc
ctcagaaaccccttcagtctgaagctatggtggcgttacttaattgcacgaaccgaatcc
cctttcaagaaaagagcagtaatctatgaacgagctcttaaagcccttcccggaagctac
aaactatggcatgcttacctccgcgaacgcctcgaattggtacgcaatttacctatttct
cacgcccagtaccaaaccctaaacaatacatttgaacgagctttagttacaatgcacaaa
atgcctcgaatttggatcatgtacttgactagtttaactgagcagaagctggttactcga
actcgtaggacctttgatagagctctctgtgcattgcctgtgacacaacacgaaaggatt
tgggagccatatttggttttcgtgagccaaaggggtgttcctatcgagacgtcacttagg
gtttacagaaggtatctgaagtatgaccctggtcatatcgagaatctcattgagttcttg
ttgaattcaaggctatggcaagaagcagctgagagattagctggcgtcttaaacgatgat
agattctattcgattaaggggaagactaaacataggctatggttagagctatgtgatttg
cttacccaacatgctacagagatctcaggtttgaatgtggatgctatcattagaggtggt
atcaggaagtttacagatgaagtgggtcgtctatggacttcattagcagattattatatc
aggaggcagttgttagagaaagccagagatatatttgaagaagggatgactactgttgtg
acagtaagagattttagtgtaatctttgatgcatactcacagtttgaagaaagcgtgctt
gctttgaggatggaaaccatgactgagagtgaagatgaagaggaagatggtgagacagag
aatggcatcgaagatgaagatgaagaagatgataggcttgatgtgggaaagctggaggaa
aaacttaagaaattttggatctctgattacaaggatgttaatttgaggatagcaagattt
gagcatcttatggatagaaggcctgaacttgctaatagtgttcttcttcgccaaaaccct
cataatgtggaacaatggcatagaagagtgaagatatttgaagggaaccccacaaagcag
atattgacatacactgaggctgtaagaacaattgatccaatgaaagctgttgggaaacct
catactttatgggttgcatttgccaaattgtatgaaagtcacaaggatattggtaatgca
agggtgatatttgataaggctgtgcaagtgaactataaagctgtggataatttggctagt
gtgtggtgtgaatgggcagaaatggaacttagacataaaaatttcaagggagctttggaa
ttaatgagacgggctactgctgaaccttctgttgaggtcaaacgcagagtggctgctgat
ggcaatgaaccagtgcaaataaagttgcacaaatccttgagactttggactttttatgtg
gatttagaggaaagtttaggcactctggaatccactcgtgctgtttatgagaggatcttg
gatcttcgtattgccactccacaaattattataaactatgcaatgctattagaggataac
aagtactttgaagatgcttttaaggtgtatgaaagaggtgtgaagatctttaaataccca
catgtgaaggatatttgggttacttatctctctaaatttgtcaaaagatacgggaagtcc
aaactcgaaagggctagagaactatttgaacatgctgttgaaatggctcctgcagaagtt
gtaaagccattatacatccaatatgcaaaactggaagaagattatggtctggctaaaaga
gccatgagggtatatgatcaaggcacaaaagctgttccatcaaatgagaagttaagcatg
tatgaaatatacatcgcgcgtgcagccgaaatatttggagttccaaaaactcgggagatt
tatgagcaggcaattgtgagtgatggacttccagaaaaggatgcaatgaagatgtgtata
aaatatgcagagcttgaaaagagtcttggagaaatcgatagggcaagaaagatatatgtt
tatgcgtcttggttggctgatcccagatctgatggtgatttttggaataaatggcatgaa
tttgaagtgcaacatgggaatgaagatacttttagagatatgctcaggattaagaggagt
gtttctgctagacatagccagacacacgtgatgctacctgagtacttaatgcaaaagcct
acagtcgatgaagccatggacgcattaaagaaagccggtgtccctgaagacgaaatggcc
gccttagaaagacagctggcacctgccgcccccaaaaccaccaccaccaccaccaccacc
ttggattccggcaaccggaagcttggatttgtgagtggcggtgtacagtcgtcggaaacc
gcctccggaatccaaaaccaggaagagattgagcttccggagagtgatgatgatgatgat
gatgatgatgatgggaaagttgagatctcacagaaagatgttccggaagctgtttttgga
ggacttgtgagaaaaagagatgaagaagaagaagaacaagtgaaaaaagataatgaaaat
ggtgatgctggtagtcgtcttggtgcacttgaaagaattaagcgaatgcgacaaggaaac
tag
DBGET
integrated database retrieval system
