KEGG   Lactuca sativa (garden lettuce): 111900960
Entry
111900960         CDS       T05352                                 
Name
(RefSeq) UBP1-associated protein 2C isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111900960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111900960
   03041 Spliceosome [BR:lsv03041]
    111900960
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     111900960
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111900960
Spliceosome [BR:lsv03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    111900960
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 RRM_3 Nup35_RRM_2 Cut8
Other DBs
NCBI-GeneID: 111900960
NCBI-ProteinID: XP_023752596
LinkDB
Position
8:120855898..120857977
AA seq 335 aa
MEEIKKRKLEQNANGEITSNTSEDQLRSLLDPLSKTQLVDLLSKLGCQYPSISEEIKSVA
SADPANRKLFVRGLAWNTTTETLYAAFKEHGEIEEGAVIVDKASGKSRGYGFITYKYIDS
TRKALEAPSKLIDGRMAVCTLACEGISTIGSSNTTTITTDQAQRKLYIGGLSPEITSEML
LLFFKKHGEIEEGSVAYDKDTNKSRGFGFITYKTVEAAKKAIDNPQKMLGGRNITVKLAD
NQKGKIVQTQILPGGTTVPIQMVGYGQPGKTHLSGGYGFPSQAIAAYPGSGPQAATTEYP
IQTQIGYSQYFLRKENVENSLITPTGGYAYYGTKQ
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggaggaaattaaaaagagaaagcttgagcagaacgcgaatggcgaaattacttccaat
acgtcggaggatcagttgcgttctctgttagacccactctccaaaactcagttggttgat
ctcttatcaaagctaggatgccaatacccttctatttctgaagaaattaaaagtgttgca
agtgcagatccagcaaatcgaaagctatttgttcgtggcttagcctggaataccaccaca
gaaaccttgtatgctgcgtttaaagaacatggtgaaatcgaagagggtgctgttatagtt
gataaagcaagtggaaaatcacgtgggtatggttttattacatataaatatatagattca
acccgaaaagctctagaagcacctagtaaactcatcgatgggcgtatggctgtttgcact
ttagcatgtgaaggcataagtacaataggtagtagtaatactactactattactactgat
caagcacaaaggaagctttatattggtggtttgtcccctgaaataacaagtgagatgctg
cttttgttttttaaaaaacatggtgagatagaagaaggttcagttgcatatgataaagac
acaaacaaatcacgtggtttcgggttcattacttacaagactgtagaggctgccaagaag
gctattgataaccctcaaaagatgttagggggtcgaaatataactgtgaagcttgctgat
aaccagaagggcaaaattgtccagacacaaatactacctggaggaacaacggttccgatt
cagatggttggatatggacaaccgggaaagacacatttgagtggcggttacggtttccct
tctcaggcgattgcagcctatcctggttcgggcccacaggctgcaaccactgagtatcca
atccaaactcagattggatattcacagtattttttaaggaaggaaaatgtggagaattct
ttgataacaccaacaggggggtatgcgtactatggcactaagcaatga

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