Lactuca sativa (garden lettuce): 111901109
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Entry
111901109 CDS
T05352
Symbol
LOC111901109
Name
(RefSeq) transducin/WD40 repeat-like superfamily protein isoform X1
KO
K24738
rabconnectin-3b
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
111901109 (LOC111901109)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111901109 (LOC111901109)
Membrane trafficking [BR:
lsv04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
111901109 (LOC111901109)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
PAC11
Beta-prop_SCAP
Chlam_vir
CandA_N
Motif
Other DBs
NCBI-GeneID:
111901109
NCBI-ProteinID:
XP_023752745
LinkDB
All DBs
Position
6:153099825..153105894
Genome browser
AA seq
1404 aa
AA seq
DB search
MKCRSVACVWSESPPVHKVTATAVLDRPSTLYTGGSDGTIFWWNLSSTNSDHDIKPVAIL
CGHTAPISDMGICFPASTLGDEKISDPSNVASNSSSVNYGSLISACTDGVLSVWGRDSGH
CSRRRKMPAWVGSPYMVQALPENRRYVCVACHFIDSVNSLDNHQSLDYSTELGEPSTNIE
PQYKKPSRCTVVIIDSYTLTIVQTVFRGTLSIGPFKFMSIVTPIGDMEKESVLIADSFGN
MQCVSLLKDTTRSEDISDDSQKNSSHMEMTDLLQESSEGELPISFAASGQVLAILYTTYC
IFKLVDGSTKVGEISLLDDQLCQYDVAGCLFLGNGFVQTVVDMEENHNMYVETFAVWNNK
GYVIMFTISYSYSGKGFKYVPLCTIPVVSHPPNVELSFSFVLMNQNLVRIESICLHTEEP
VHWKPHITIWAKGENFNQECKLVGKGSYFDEWFVGSKNSNGLLKREFVVTSSMVISENDS
SPYAIVYGYDSGEIEVLRFNMFSEKVEGSPCEEVDSCAWKQYLSGHTGAILCLAAHQMVN
TSRGFNSTIFLISGSMDCTICIWDLNSSNLVAVMHHHVQPVRQIILPPPHTDRPWSDCFL
SIGEDSCVALASLETLRVERMFPGHPYIPSRVVWDSTRGYLACFSLNHSATSDASDVLYI
WDIKSGARERVLRGNAAHSMFDHFCTSGNKNNFSLSSMERNTSASSLLLPVIEDTQVSQS
HPNTPEKRVASTTDLSHATTRMIQHGTHGSNGYPITCSCPFPGIATLTFDMTSLMSLRAE
SSENQNDEPKIQTPKKGLERINSSLSTDGDQETHVGPTEYTDWAHSIEGCLFRFSLSVLH
LWDVDHELDKLLVSEMKLKKPKNFFVASGLLGDRGSLTLTFPGPSATLELWRSSSEFCAM
RSLTMVSLAQHMISLSHSCSTASSALAAFYTRKFAEKFPDIKPPLLQLLISFWQDKSEHV
RMAARSLFHCAASRAIPFPLRNHNSNDNNGKEDSEMLSWLESFERQDWVSCVGGTSQDAM
TSHIVVAAALVVWYPSLVKSTLANLVIHPLLKLVMAMNEKYSSTAAEILAEGMEGIWSVC
MSSEIPRLISEIFLQIEHVRGQSVKPMTTHGSAANLEIRESLVGILLPSLAMADVTSFLH
VIERQIWSTASDSPVHIVSLMTLIRVARGSPRNLAPYLDKVVNFILQTMDPGNMAMRRSC
LQNSMATLKEVVRVFPMVSLNDSSTRLAVGDAIGDINKSIIRVYEMQSMTKIKILDASGP
PGLPTLLGGASETTANTAISVLSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLSRNLVP
VQCTKLIFVPPWEGFSPTSTRSSVMASVMGNGKHFSQDNSKDLSEMDRLKNLLHNLDLSY
RLEWSSGRQVLLKRHGQELGTFQL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtcgatctgttgcttgtgtatggtcagagtcgccaccggtccataaagttacc
gccaccgccgtacttgaccgtccgtcgactctctacaccggcggatccgatggcaccatc
ttctggtggaatttatcttcaactaattccgatcacgacattaaaccggttgctatctta
tgtggtcatactgcaccaatttctgacatgggtatctgtttccctgcatcgactctagga
gatgaaaagataagcgatccaagtaatgtggcatcaaactctagttcagttaactatggt
tctctaataagtgcgtgtactgatggtgtattatcggtttggggcagagacagtggacat
tgcagccgtagaaggaaaatgccagcttgggttgggagtccatacatggttcaagcttta
cctgaaaataggagatatgtatgtgttgcctgtcatttcattgactctgttaattcatta
gacaaccatcagtcacttgattattctactgaattaggtgaaccttcgacaaatatagaa
ccacagtataagaaaccttcaagatgcacagttgtaataatcgattcatatactctaaca
atagtgcaaaccgtgtttcgtggtactttatctattgggcctttcaagtttatgtctata
gtgacacctattggtgatatggagaaggaatcagtgctgattgctgattcctttggtaac
atgcaatgtgtatcactactaaaggacaccacccggagtgaggatatttcagatgactca
caaaagaattcttctcacatggaaatgaccgatttgcttcaagagtcaagtgaaggggaa
cttccaatttcattcgctgcttctgggcaggttttagcgattctgtatacaacctattgt
atatttaagctggtggatgggagtactaaggttggagagatttctcttttagatgatcaa
ctttgtcagtatgatgttgcagggtgtctgtttcttggaaacggttttgttcagacagtg
gtagatatggaggaaaaccataacatgtatgtggaaacttttgcagtgtggaacaacaaa
ggttatgtaattatgtttaccatatcatattcatattcagggaaaggtttcaaatatgtg
cctctatgcacaatccctgttgtttcacatcctcctaatgttgagttatcattctctttt
gttctaatgaatcaaaatcttgtgcggattgaatcaatctgtctccacaccgaagaacca
gtgcattggaaaccccatataacgatatgggcaaaaggtgaaaactttaatcaagaatgt
aaattggttgggaaaggaagctattttgatgagtggtttgtgggttcaaagaattcaaat
ggtcttttaaaaagggagtttgtggtgacttcttcaatggttatttctgaaaatgactcc
tccccttatgcgatagtttatggatatgatagtggagaaatagaagttcttcggttcaat
atgttctctgaaaaagtggaaggaagtccatgtgaagaggtggattcatgtgcatggaag
caatatctttcaggacacacaggtgctatactatgtttagctgcacatcaaatggtgaat
acctcaagaggattcaactccactatctttttaatctctggaagtatggattgcacaata
tgtatatgggatctcaactccagcaatcttgttgcagtgatgcatcatcatgtacaacct
gtacgccagataatcctacctcctccccacactgatcgtccatggagtgattgtttttta
tccattggagaagattcatgtgttgctttagcttcacttgagactttaagggtggaaaga
atgtttccaggacacccgtatatcccttcaagagtagtttgggatagtacacgaggctat
cttgcatgtttctcactgaatcattcagcaacatctgatgcatctgatgtcctctacatt
tgggatataaagtcaggtgctcgtgaacgagttcttcgtgggaatgctgctcattcaatg
tttgatcatttttgtacaagtgggaataagaataacttttctctaagttccatggagagg
aacacttctgcttcctcattgcttcttccagtgattgaagatacacaagtttcacaatct
catccaaatactccagagaaacgcgttgcttcaacaacagatttatctcatgccactaca
aggatgattcaacatgggacccatggaagcaacggatatccgattacatgctcttgccct
ttcccaggaattgcaacattgacttttgatatgacttcattgatgtcacttagggctgaa
tcttctgaaaatcagaatgatgaacctaagatccagacacccaaaaaggggttggaaaga
atcaacagctctctgagtacagatggagatcaagaaacccatgtgggtcccacggaatac
actgattgggctcattcaatagaaggatgtttatttcggttcagcttatcagttttgcac
ttgtgggatgttgatcatgagcttgacaagctgttagtttctgagatgaaactcaagaaa
cctaaaaatttctttgtagcttctggtttgcttggggacagagggtctctcacattgaca
tttcctggtccaagtgcaacattagagctttggagatcatcttcagagttctgtgcaatg
aggtctttaactatggtgtcccttgctcaacacatgattagtttgtctcattcatgctcc
actgcaagcagtgcattagctgcattttacacacgaaaattcgcagagaaatttcccgac
attaagccacctttactccagcttttaattagcttttggcaagataaaagtgaacatgtc
cgcatggcagcacgttcattgttccactgtgcagcttcaagggcgattccgtttccactc
cggaatcacaattccaacgataataatggaaaggaggattccgaaatgttgtcatggctg
gaatcatttgaacgtcaagactgggtatcatgtgtaggggggacaagtcaagatgcaatg
acttctcacattgttgttgctgctgctttagttgtttggtacccaagtcttgtaaagtca
actcttgctaatctggtcatacatccactgttgaaattagttatggctatgaatgaaaaa
tatagttctacagcagctgagattttggcagaaggtatggaggggatatggagtgtttgc
atgagttcagaaatacctcgtttaatttcggagattttccttcaaatagagcatgtgagg
ggacaatctgttaagccaatgacaacacatggttcagctgcaaatcttgagatccgggaa
tctttggttgggattcttttaccaagtttagcaatggctgatgtcacatcttttttacat
gtgattgaaagacaaatttggtctactgcttctgattcacctgttcatattgtctccctc
atgaccctcatcagagtcgctcgtgggtcccctagaaatttagctccttaccttgataag
gtggtgaattttattctacagacaatggaccctggcaacatggccatgcgtagaagttgc
ttacaaaattcaatggcaacattaaaagaagttgtgcgtgtttttcccatggtatccctc
aatgactcatctactcgcttagctgttggtgatgcaattggagatattaacaaatctatc
atccgtgtgtacgaaatgcaaagtatgacaaaaataaagatattggatgctagtggacct
ccagggcttccaaccttgcttggaggagcctctgaaacaactgcaaatactgcaatttct
gtgttgagcttttcacctgatggagaggggttgatagctttctctgagcatggtttaatg
atcagatggtggtcattgggatccatgtggtgggaaaagcttagtaggaatcttgttcct
gttcaatgcactaaactgatatttgttcctccatgggagggcttctctcctacttccaca
agatctagtgtaatggcaagtgtaatgggtaacgggaagcacttttcacaggataattca
aaggacttgagcgaaatggacagattgaaaaacttgcttcataatcttgatctctcatac
aggctagaatggtccagcggtaggcaagtattactcaagaggcatggacaggaattggga
actttccaattataa
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integrated database retrieval system
