Lactuca sativa (garden lettuce): 111901157
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Entry
111901157 CDS
T05352
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111901157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111901157
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111901157
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111901157
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111901157
NCBI-ProteinID:
XP_023752802
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All DBs
Position
6:155789032..155796296
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AA seq
581 aa
AA seq
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MSGILNSGVNGSTSTFPDATGRAFTSAFSAQLGSSAADMNHTDAIDLLGLRSMNGNFNIP
SMPGAYTSRNSGLNGPLNGVQPPAGSLSNGRYAVNNLPVALSQQSAASSLGLSGITNNGG
SGLGQSLGNREQIISSMAMGNLVNGGNIGRSLSSGGLNMPGVASRLNLTAPQMVSLLGNS
YSGGGGPLSQNQFQGGNSHLSSMALLSELNRDHSFDMNDFPQLSGHLTSAGGSQRQLGGL
ARRQNVGFMQQNQEFSIQNEDFPALPGYKGGNADFPVNMHQKEQLRDNVVSMMQSQQHLP
VGRSGGFSLGGAYSSHQQQQHAPINGGGGGGGPSYLPANTQDLHFHGSEARNSGMLPTGS
RPVSVSGGSYDQLMQQYQHFQKQSQIRLVSPFRDQDLKSPQPSQSPADRFGLLGLLNVIR
MNNPDLTPLALGIDLMTLGLNLNSPDNLYKKFSSPWSDESAKGEPHFSIPECFNTKQPAP
LNQDSFSRFSPETLFYIFYSMPKDEAQLFAANELHNRGWFYHRELRLWFSRAPNIELLVK
TATYERGCYYCFDPNTWETIRKDNFVVQYEMVEDRPVVPRR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggatacttaattcaggtgttaatgggtcaacatcaacttttccagatgcaact
ggaagagcttttacgtcagcattttctgctcaattaggttcatctgctgctgatatgaac
cacactgatgcaatagatttgctagggttacgaagcatgaatgggaacttcaacattccc
agcatgcctggagcatacacttcaagaaattcaggattaaatggtcctttgaatggtgta
caaccacctgcaggaagtttatctaacggacgatatgcagtaaataatcttcctgttgca
ctttctcagcaatctgctgctagctcacttggactttcagggattacaaataatggaggg
tcaggtttaggtcaaagtttaggaaacagagaacaaattataagctccatggcaatgggt
aaccttgttaatgggggcaacattggaagaagtttaagctctggtggactcaatatgcct
ggggttgcttctcgcctgaatctaactgcaccccagatggtgtctctgctaggaaattca
tactctggtggtggagggccactttcacaaaatcaatttcaaggagggaatagtcattta
agttcaatggctttgttaagtgagctcaatcgtgaccattcttttgacatgaatgatttc
cctcagttatctgggcatcttacctctgctggtggttctcaaagacaactaggggggttg
gcacgcaggcaaaatgtgggatttatgcaacaaaatcaagaattcagcattcaaaatgaa
gattttcctgctttacctggatacaaaggtggcaatgcagattttccggttaatatgcac
caaaaggaacaacttcgtgacaatgtggtgtccatgatgcaatcccaacaacatttgcct
gtgggaagatcaggtggattcagcttgggaggtgcatattcatcacatcaacaacagcag
catgctccaatcaacggtggtggtggtggtggtgggccctcctaccttcctgcaaacact
caagatctccattttcatggttctgaggcaaggaacagtggaatgcttccaactggatca
cgacccgtgagtgtatcgggtgggtcctacgatcaactgatgcagcaataccaacacttc
caaaaacaatcccaaatacgcctagtcagcccattcagagaccaagatctaaaatcccct
caaccatcacaatcccctgctgaccgattcggtttactcggtttactaaacgtaatcaga
atgaacaatcccgatttaacccctcttgctcttggaatcgacctcatgacacttggccta
aatctaaattcacctgataatctttataaaaaattctcatctccatggtctgatgaatcc
gctaaaggagaacctcatttttccattcccgaatgtttcaacaccaaacaaccagctcct
ttaaaccaagatagcttctcgagattttccccggagactttgttttatatattttacagc
atgccgaaagacgaggcccagttgtttgctgcaaatgaactgcacaatagagggtggttt
taccaccgagagttgcgtttatggttctcaagagctccaaacatcgaactcttggtcaaa
acagctacttatgaaagaggttgttattactgttttgaccccaatacctgggaaacaatt
cgaaaggacaactttgttgtgcaatatgaaatggtggaagacaggccggtggtcccgcgt
cgttag
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