Lactuca sativa (garden lettuce): 111901176
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Entry
111901176 CDS
T05352
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111901176
03015 mRNA surveillance pathway
111901176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111901176
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111901176
5.6.2.5 RNA 5'-3' helicase
111901176
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111901176
mRNA cycle factors
Common to processing body (P body) and stress granule
111901176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111901176
NCBI-ProteinID:
XP_023752823
LinkDB
All DBs
Position
6:156936640..156943973
Genome browser
AA seq
1260 aa
AA seq
DB search
MDSQPNNLYDTASQPDTGHDDAYRFLEFNTQGEEDFDYPEFQELSQPNAIRSSPSSSVWP
TPSDSISVDATAAVDHHSDNNASPVSETSAKGGGDRGNNNHNNHLNNHNNDNNNQASAVD
ALAAGMSGLNFEDTGDDEGYEYAKGDFMEHACRYCGVQNPACVVRCNVPSCRKWFCNSRG
NTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLC
REPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSETEQLRARQISAQQINKVEELW
KTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNL
TIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEE
VALELRVSQGVPCDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEV
EVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA
KQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDT
SEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANF
RFRQVLIDESTQSTEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERL
VLLGVKPIRLQVQYRMHPCLSEFPSNNFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFF
YVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMS
RNGALRQQLYKDIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARY
GIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKVYNERRFFFG
GGPIVPTDSFGSVASTNSNADRRNGRSRGSYMPPGAPNGAHKSGLHYRVPPPYGGPQPYA
IPTRGAIHGPVGGVSHVPPPGNRGFTGGGGGGGHLPHQQQGLGSGSGSQQAIGSAFNFPS
MENPNSQPSPGGPLSQPGYVSNMTQGQSQTYRDGFSVGGMSQDFLGDDFKSQGSHVAYNV
ADFSTQASQGGYSVEYVTPATQGGFPGNFLNQNSQAGFSRFGSGNDFMSQEYMFTQVGFK
DPSQDDSSQSHFTSAATTTSLQTQGVMNMNHVYSSQGGFTHYNSQPLNMPPQQGQGHYNS
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggattcacagccgaacaacctctacgacaccgcgtctcagccggacaccggtcacgac
gacgcctatagatttctggaattcaacactcaaggagaagaggacttcgattaccccgag
tttcaagagctctcacagccaaatgccattcgatcttcaccatcatcatcggtatggcca
acaccatcggactcaatctccgtcgacgcaaccgcggcagtcgatcatcattccgacaac
aacgcttcccctgtctcagaaacttcggccaagggtggtggtgatagggggaataataat
cataataatcaccttaacaatcataacaatgataacaataatcaggcatctgcggttgat
gccctagctgcggggatgagcggcttgaattttgaagacacgggagacgatgaaggttat
gagtacgcaaaaggggatttcatggaacatgcatgtaggtattgcggggtgcagaatccg
gcatgtgttgtgaggtgtaacgttccctcgtgtcgtaagtggttctgtaactcgagaggg
aatacttctggctctcacattgttaatcatttggttcgagctaaacacaaagaagtgtgt
ctccataaagacagtcctctaggagagacaattctcgaatgctacaattgtgggtgtaga
aatgttttccttctgggatttatttcagcgaagacagagagtgttgtcgttcttctttgc
agggaaccttgtctgaatgtgaatgctttgaaagacatgaactgggacttgagtcaatgg
tgtccacttattgatgacagatgtttcttacagtggcttgttaaggttccatctgaaaca
gagcagctacgtgcaagacagatcagtgctcagcaaattaacaaagtagaagaactttgg
aagacaaatcctgatgcaagtttggaagatcttgagaaacctggtgtagatgatgaacca
cagcctgtagtcttaaagtatgaagatgcttatcagtatcaaaatgtgtttgccccactt
atcaagcttgaagctgactatgataaaatgatgaaagaatctcaaagtaaagacaatctc
acgattcgttgggatattggtcttaacaagaagcgtgttgcatattttgttttcccaaag
gaagacaatgaattgcgccttgtacctggtgatgagttacgtctcaggtattcaggggat
gcagcacatccagcctggcagtcagttggacatgtgataaagttaactgcacaagaagag
gtagcacttgagcttcgtgtaagccagggagttccttgtgatgtgaatcatggttttagt
gttgactttgtatggaagagcacaagttttgatcggatgcaaggggctatgaaaactttt
gcagtcgatgaaacaagtgttagcgggtatatctaccatcatctgttaggacatgaggtt
gaggttcaaatggtgcgtaatgcattgccacgtcgttttggtgcccctggtcttcctgag
cttaatgcatctcaagtttttgctgtaaaaagtgtccttcaaaggccaataagtttgatt
caagggccaccagggacaggtaaaaccgtcacatctgctgcaattgtttatcatatggct
aaacaaggccaaggacaggttctggtatgtgctccaagcaatgtggctgtagaccaactt
gcagaaaagataagtgccactggtttaaaggttgtaaggctgtgtgcaaagtcaagggaa
gctgtgagttcacctgttgaacatttgacccttcattatcaggttcgccatcttgataca
tctgaaaagagtgaactccacaagcttcaacaattgaaagatgaacaaggagagttatct
agcagtgatgagaagaaatataaagcactaaaacgggctacagaaagggagatatctcag
agtgctgatgtcatctgttgcacatgtgttggtgcaggggacccacgcttggcaaatttt
agattccgccaggtgcttattgatgaatctactcaatccacagagcctgagtgtctcata
cctcttgttcttggggcaaaacaggttatccttgttggcgatcattgccagcttggtcca
gtcatcatgtgcaagaaagcagctcgtgctggattagctcagtctctatttgaaagactg
gtgcttcttggtgtaaaaccaattagattacaggtacaatatcgtatgcatccatgtctt
tcagaattcccttcgaataatttttacgaaggtacccttcaaaatggagtgaccataaac
gaaaggcaatcaacaggcattgattttccatggcctgtcccaaatcgccccatgtttttt
tatgtccagatgggacaagaagaaataagtgctagtgggacatcctatcttaatagaaca
gaggctgcaaatgttgaaaaaatagtcactacttttttaaaaagtggtgtagtccctagt
cagataggggttataacaccatatgaaggccagcgtgcatatattgttaattacatgtca
agaaatggtgcacttaggcagcagctttacaaggacattgaggttgcaagtgtggattca
ttccaaggaagggaaaaagattacattattttgtcatgtgtcagaagtaacgaacatcag
ggtattgggtttctgaatgatccacgtaggcttaatgttgcacttactcgtgctcgatat
ggtattgtgattcttggaaatccaaaagttcttagtaaacaaccattatggaatggctta
ctcacacactataaggagcatgagtgtttggtggaaggacctctcaacaacttgaagcaa
agtatggttcaatttcaaaaaccaaaaaaagtatacaatgagcggaggtttttctttggt
ggtgggcccattgtacctactgatagcttcggttctgttgcctcaacaaattccaatgct
gacagaagaaacggtcgttctagaggttcatacatgccgcccggggctccaaatggtgct
cataaatccggtctgcattatcgtgtgccgccgccttatggtggtcctcagccttacgcc
ataccaacacgcggtgcaattcatggacccgttggcggtgtttctcatgttccgccacca
gggaaccgtggtttcactggcggtggaggtggaggtggtcatctgccacatcagcagcaa
ggcttgggctcaggctcaggctcacagcaagcaatagggtctgcttttaactttccttca
atggaaaatccaaatagtcaaccatcccctggtggtcccttatctcagcctggatatgtt
tctaatatgactcaggggcaaagccagacatatcgtgatgggttttctgttggggggatg
tcgcaggatttcttgggggatgattttaaaagccaaggatcacatgtggcgtataatgtt
gctgatttttccacacaagcttctcaaggtggatatagtgttgagtatgtgactccagcc
acccaaggtggttttccgggcaattttttaaatcaaaattcgcaagctggattttctcga
tttggtagtgggaatgatttcatgtctcaggagtacatgtttacacaagttggatttaag
gatccatctcaagatgattcttcacagagccacttcacttcagcagccaccaccacttct
cttcagacacagggtgtgatgaacatgaatcatgtatactcatcccagggtggttttaca
cattacaactcccaacccctaaacatgccacctcagcagggacagggacactacaacagt
taa
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