Lactuca sativa (garden lettuce): 111901478
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Entry
111901478 CDS
T05352
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111901478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111901478
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111901478
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Methyltransf_2
Motif
Other DBs
NCBI-GeneID:
111901478
NCBI-ProteinID:
XP_023753117
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Position
2:192524957..192527228
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AA seq
257 aa
AA seq
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MAAKGGAAPATYSPSPTTFKKKRPPIFTDVDWVRPDGRDFHQCRPAFLRTGAVNAASGSA
YAEFGNTKVIVSIFGPRESKKAMMYSDTGRLNCNVTYTTFATPVRGQASSDNKEISSQLH
KSLEGAIMLDTFPKTTVDVFALVLESGGCDLPVVISCASLALADAGIMMFDLVAAVSVSC
LGKNLVIDPVSEEENYQDGSLMITCLPSRNEVTQLTITGEWSSPKIHEAMELCLDACSKL
GKIMRSCLKESASTSQE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaaggaggagcagctccggcgacgtactcaccgtccccgacaacctttaag
aagaagagacctcccattttcaccgatgttgattgggtacgccccgacggtcgcgatttt
caccagtgcagacctgcatttttacgaacgggagctgtaaatgcagcatcaggatctgct
tatgcagagtttggtaatactaaggtcattgtgtccatatttgggcccagggaaagtaag
aaagcaatgatgtacagtgatactggtcgcctaaactgtaatgttacttatacaactttt
gccactccagttcgaggacaggcatcatcagacaacaaagagatttcatcacaattgcac
aagtctttggagggtgccataatgcttgatacatttcccaaaacaactgttgatgttttt
gcattagtattggagtctggtggctgtgatcttcctgtagtaatctcatgtgccagtctt
gctttagctgatgcagggattatgatgtttgatttggttgctgcagtttctgtgtcttgc
ttggggaagaatcttgtgattgaccctgtttcagaagaagaaaattatcaagatggtagt
cttatgattacatgtttaccctcacgtaatgaggtaactcagttgacaataactggagaa
tggtcttccccaaagattcatgaggcaatggaactatgtcttgatgcgtgttccaagctt
gggaagatcatgagatcatgtttgaaagaatcagcctccacctcacaagagtag
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