Lactuca sativa (garden lettuce): 111901591
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Entry
111901591 CDS
T05352
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111901591
Transcription machinery [BR:
lsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111901591
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
111901591
NCBI-ProteinID:
XP_023753232
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Position
9:66815732..66819460
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AA seq
486 aa
AA seq
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MMSTTAIGLRATNSLLGSSYFYSDTTEKFSCNGDISFTFVTTKNTITAKKQSNYSHSLTS
KRDTDSHSIRALKQHVATSSDPSISTDQWVQRFHHLEDKSSEQELPVEALLLLQSFLEKQ
WKLPTEKNTNTTTDTPTEKDSKKIHIISSQISARKRRIEARKKTPNSCSEIGSELLQNQF
KGHVKGVRSEGLLTQSEVIILSKKIKIGLRLEEQKSRLKEKLGYEPSEGQLASSMRISRM
DLRKKQIESTLAREKLAMSNVRLVMSIAKRYDNMGAQMADLIQGGLIGLLQGIKKYDSSR
GFKISTYVYWWIRQGVSRALIENSKILRLPTHLHERQSAIRNAKAKLEEQGITPSIDRIT
ESLNISRKKVINATQAITKVFSLDNPGQTLDSDIADNCMENDPWHGVDEAALKYEVNKLI
NMTLGERERDIIRLYYGLDKECLYWEDIGKRIGLSRERVRQIGLVALEKLKHAARKNGLE
EMLVKH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctacaactgcaattggactaagggcaacaaatagcctcttgggttcatcctat
ttttactcagatacaactgaaaaattctcctgcaatggtgatattagcttcacatttgtc
actacaaagaacacaatcactgcaaagaaacaatccaactacagccatagtcttacatcc
aaacgagatacagattcccattccataagagctttaaaacaacatgtagctacttcttct
gatccttcaatctctacagaccaatgggttcaaagatttcaccacttggaagacaaaagc
tctgaacaagaacttcctgttgaagctttactacttttacaatctttcctggagaagcag
tggaaacttccaaccgagaagaatacaaatacaactacagatactcccacagaaaaagac
agcaaaaaaatacacatcattagctcacagatatctgcacgaaagcgtagaatagaagca
aggaagaaaacaccaaatagttgctctgaaattggttcagagctccttcaaaatcaattt
aaaggtcatgttaaaggggtaagaagtgaaggacttctcactcaatcagaggtgatcatt
ctatcaaagaaaatcaaaatcggtttacgcttggaagagcagaaatcaagactgaaggaa
aaattgggatatgaaccttcagaagggcaacttgcaagttccatgaggatttcaagaatg
gacttaagaaaaaaacaaattgaaagcactttggcaagagagaagcttgcaatgagcaat
gttcgtttagtgatgtctattgcaaaaagatatgataacatgggagctcaaatggctgat
cttattcagggaggtctaattggactacttcaagggataaaaaagtatgattcatcaaga
ggtttcaagatttctacctacgtttattggtggatacgacagggtgtttcaagagctctg
attgagaattctaaaatcctaagattacctactcatttgcatgaaagacaaagtgcaatc
cggaatgccaaagccaaactagaggaacaaggaataactccatcaattgatagaattaca
gaaagtctgaacatatccagaaaaaaagttataaacgcaactcaggcaatcactaaagta
ttctcacttgataatcctggacaaacactggatagtgacattgcagataattgcatggaa
aacgacccatggcatggagtagatgaagcagctctcaagtatgaagtaaacaagctcata
aacatgactctaggggaacgcgagagagatatcattcgtctttactatggtcttgacaag
gaatgcctttattgggaggatattggtaaaagaatagggttatcgagggaacgtgttagg
caaattggacttgttgcattagagaaactaaaacatgctgcaagaaagaatggacttgag
gaaatgttggtgaaacattaa
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